Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F001573145.1_202016-02-25] 724 sequences; 35,934,203 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq56 120 2e-22 seq52 107 1e-18 >seq56 Length=164687 Score = 120 bits (132), Expect = 2e-22 Identities = 158/218 (72%), Gaps = 12/218 (6%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || || ||||| ||||| |||||||| || | || | || || Sbjct 65734 ACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCG 65675 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || ||||| || || || || ||||||||| | || | || |||||||| Sbjct 65674 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGTGGAATTCCTTCCTTGTCCTGG 65615 Query 34893 ATCTTCTGTTTGACGG-----ATGCTATC-GATTCACCGGCCTCAACATCGACGGTTATG 34946 |||||||| |||||| ||||| || ||| | ||| ||||||| || ||| Sbjct 65614 ATCTTCTGCTTGACGTTGTCAATGCTGTCCGAT------GGCTCGACATCGAGCGTGATG 65561 Query 34947 GTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 || || ||||| ||||||||||||||||||||||| || Sbjct 65560 GTCTTGCCCGTCAGAGTCTTCACAAAGATCTGCATCTT 65523 >seq52 Length=165522 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || || ||||| ||||| |||||||| ||| | || | || || Sbjct 10619 ACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGGCCGTCCTCG 10678 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || ||||| || | ||| ||||| ||| | || | || |||||||| Sbjct 10679 AGCTGCTTACCAGCAAAGATCAATCGCTGCTGATCTGGAGGAATGCCTTCCTTGTCCTGG 10738 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 |||||||| ||||| | ||||| || | ||| || || | || ||||| || Sbjct 10739 ATCTTCTGCTTGACATTGTCAATCGAGTCCGAAGGCTCGACGTCCAACGTAATGGTCTTG 10798 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 |||||||| ||||| || ||||||||||| || Sbjct 10799 CCCGTGAGTGTCTTGACGAAGATCTGCATCTT 10830 Score = 107 bits (118), Expect = 1e-18 Identities = 171/244 (70%), Gaps = 1/244 (0%) Strand=Plus/Minus Query 34752 TTTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCC 34811 ||||| || | ||| | | |||||||| | || || ||||| ||||| |||||| Sbjct 29026 TTTCCACCACGCAAGCGGAGCACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAGTCC 28967 Query 34812 GAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGC 34871 || ||| | || | || || ||||| || || ||||| || | ||| ||||| ||| | Sbjct 28966 GAGAGGGTGCGACCGTCCTCGAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGATCTGGA 28907 Query 34872 GGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCA 34931 || | ||||||||||| |||||||| || ||| | ||||| || | ||| Sbjct 28906 GGAATACCCTCCTTGTCCTGGATCTTCTGCTTCACGTTGTCAATCGAGTCCGAAGGCTCG 28847 Query 34932 ACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATTCGTAGAC 34991 || || | || || || || ||||| | |||||||| ||||||||||| || || | | Sbjct 28846 ACGTCAAGCGTGATCGTCTTACCCGTCAACGTCTTCACGAAGATCTGCATCTT-GTTGTC 28788 Query 34992 TTGT 34995 |||| Sbjct 28787 TTGT 28784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324630735514272