Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F001573145.1_202016-02-25] 724 sequences; 35,934,203 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq54 93.3 3e-13 >seq54 Length=165282 Score = 93.3 bits (102), Expect = 3e-13 Identities = 354/552 (64%), Gaps = 8/552 (1%) Strand=Plus/Plus Query 550025 TGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGA 550084 || || ||||| ||||| |||| | || || || || ||||| ||||| || ||| | Sbjct 1026 TGCGTCGGTGTGTGGCAGAATGATCGTGTGGAGATCATCGCCAACGATCAGGGGAACCGC 1085 Query 550085 ACTACTCCATCTTATGTTTCTTTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAA 550144 || || ||||| ||||| | ||||| || | |||| | | | |||||||| || || Sbjct 1086 ACGACGCCATCGTATGTGGCCTTCACCGATTCGGAACGTCTCATCGGTGATGCTGCGAAG 1145 Query 550145 TATCAAGCCACTGGTAATCCTACCAATACTATTTTTGATGCTAAACGTTTAATTGGAAGA 550204 |||||| | || | | ||| || | || || || || || | ||||| | Sbjct 1146 AATCAAGTGGCGATGAACGCGAGCAACACGGTGTTCGACGCCAAGCGACTCATTGGTCGC 1205 Query 550205 AGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGCATTGGCCTTTCCAAATTGTTAAT 550264 | || | || |||| |||||| || || ||||||||||||||||| | | | | Sbjct 1206 AAATTCACGGACTCGATTGTTCAAGCCGACATGAAGCATTGGCCTTTTAAGGTCACTGCT 1265 Query 550265 GTTTCTGG---AAAACCTTATATTGAAGCTACTCATGAAGGATCTGTTAAACAATTTTCA 550321 | | || || || | | | | | | | |||| | || | ||| || Sbjct 1266 GGCGCAGGCGACAAGCCACAGA-TCACGATCGAGTTCAAGGGCGAGAAGAAGACTTTCCA 1324 Query 550322 -CCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGT 550380 || || | ||||| || ||||| ||| || ||||| ||| || || | | Sbjct 1325 GCCGGAGGAGATTTCGTCCATGGTGCTAACCAAGATGAAGGAAATTGCGGAGGCGTACTT 1384 Query 550381 TGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACG 550440 || ||||||| | | || || | || || ||||| || || || ||||| || || Sbjct 1385 GGGAACGGAAGTTAAGAACGCCGTCGTCACGGTTCCAGCCTACTTCAACGACTCGCAGCG 1444 Query 550441 TCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGA 550500 |||||| || |||||| || |||||||| | || || |||||||| |||||||| Sbjct 1445 TCAAGCCACGCGAGATGCGGGTACCATTGCTGGTTTGAACGTGCTTCGTATCATCAATGA 1504 Query 550501 ACCTACTGCTGCTGCACTTGCATATGGACTTGATAAACATAATGATCAAGAACTTAATGT 550560 || || || || || | || || || | || | | || | |||| ||||| Sbjct 1505 GCCGACAGCAGCGGCTATCGCGTACGGTTTGGACA---AGAAGGGCGGCGAACGCAATGT 1561 Query 550561 ACTCATCTTTGA 550572 ||||||||||| Sbjct 1562 TCTCATCTTTGA 1573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029257711614760