Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F001573145.1_202016-02-25] 724 sequences; 35,934,203 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq715 248 2e-60 seq598 125 1e-23 seq176 118 2e-21 >seq715 Length=275277 Score = 248 bits (274), Expect = 2e-60 Identities = 577/859 (67%), Gaps = 27/859 (3%) Strand=Plus/Minus Query 47842 GTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCAT 47901 ||| || || || | ||||| |||||||| ||||| |||| | |||||| | ||||| Sbjct 111541 GTATTCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGCGAGATCATATCCAT 111482 Query 47902 GAAGAGGAAGGGGTTGGGTGTGTTATACACC--CGTGTCAGGCCCATCTGTTCCAGCAGG 47959 || || ||||| | | ||| || | | || | || || | | || || Sbjct 111481 CCAGTCAAATGGGTTAGACGCGTTGTAGATCTTCGAGACA--CCAAGAGCGTGGAGAAGA 111424 Query 47960 TGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGG--G 48017 |||| |||||| |||||||||| | ||||||| | |||||| || || || | Sbjct 111423 CGATCAGCGACGAACTCGATGTACTGGCACATGAGCGCCGAGTTCATACCGATAAGCTCG 111364 Query 48018 ACACGG-GCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076 || || || | |||| || ||||||||||| ||| ||||| || | |||||| Sbjct 111363 ACTGGGAGCGAGTCCTT---GACGAACTCCTTCTCGATCGTGACGGCATCACTGACAATC 111307 Query 48077 TGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCA 48136 | | | || ||||||| | | |||| || | ||| ||||||| |||||| Sbjct 111306 TCGTGGATTCGCGACTCTGGGAGACGGTTGACAAGCTTGTTG---TAGAGCAAGCAGGCG 111250 Query 48137 AAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGC 48196 ||||| | ||| | |||||||| || ||||| ||| |||| ||||||| ||| |||||| Sbjct 111249 AAGTCACAGTGGAGACCTTCGTCACGACTGATAAGCTCGTTCGAGAAGCTGAGGCCAGGC 111190 Query 48197 ATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCC 48256 |||| || | || ||||||||||| | | ||| || || ||||||||||| ||| Sbjct 111189 ATGAGACCACGCTTCTTGAGCCAGAAGACCGAGCAGAACGAACCCGAGAAGAAGATACCC 111130 Query 48257 TCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCT-TGTCTGAGATCCA 48315 || | || ||||| ||| || | ||| | || | ||||||| || | | | ||| Sbjct 111129 TCAATGGCAGCGAAGGCGACGACACGCTCAGCAAACGCGGCGTTCTCTGAGTCACA-CCA 111071 Query 48316 GGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGG---AA 48372 | |||||||||| |||||||||| | |||||| || ||||| ||||| ||| || Sbjct 111070 GCGGAGCGCCCAGTTGGCCTTCTTCTGCACGCATGGGATTGTCTCAATGGCGCGGAACAA 111011 Query 48373 GAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACAT 48429 | | ||||| ||| | || ||| | || || | | | |||| | |||||| Sbjct 111010 GTGGTTCTT---CTCGGCGGCATCCTTGATGTACGTGTCAATCAACAGC---GAGTACAT 110957 Query 48430 CTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACAC 48489 || ||||| | ||||| || || |||||||| ||||||||| | ||| ||| ||| Sbjct 110956 TTCCGAGTGGATGTTCTCAATGGCAATCTGGAAGCCGTAGAAGCAGCGGGCTTCAGGCAC 110897 Query 48490 CTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGC 48549 ||| ||||| || ||| || || ||||| || || || ||||| ||||| Sbjct 110896 CTGGACTTCGTTGCTGAAGTTCATGGCAAGGTTCTCGTTCACAATACCATCACTGGCAGC 110837 Query 48550 AAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCC 48609 ||||| || || || || || | ||| || ||||| |||| ||| | |||| | Sbjct 110836 GAAGAACGCGAGCACGTGCTTGATGAAGTGACGCTCATTGTCGGTCATGTTGCCCCAGTC 110777 Query 48610 CTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTT 48669 || | ||| | | || || | || || || ||||||||| || || || || Sbjct 110776 CTTGAGGTCGTGCACAAGATCGATCTCCTCGACCGTCCAGAAGCTGGCTTCCGCCTTCTT 110717 Query 48670 GTACATGCCCCATATGTCC 48688 |||||| |||| || ||| Sbjct 110716 GTACATATCCCAGATCTCC 110698 >seq598 Length=3624 Score = 125 bits (138), Expect = 1e-23 Identities = 552/863 (64%), Gaps = 33/863 (4%) Strand=Plus/Minus Query 213372 GGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGG 213431 ||||| ||||| |||||||| |||||| ||||| || ||| ||||| || ||| Sbjct 3569 GGGTAGTAGTTGATGTCGATGACCTTGTTCAGGTTCTTCGTCACCATCTTGGTTACCTGG 3510 Query 213432 GCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCCTG---CACAAACTCAGGCAGGGCG 213488 || ||| || ||| |||| || |||| ||| |||| || || || Sbjct 3509 TACA---ACTTCTG---GAAGTCGTACTTGCCATCCTCACCCACGAACTTTGGAAGAGCA 3456 Query 213489 ATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTG 213548 || || |||||||| || |||||||| | || ||||||||||| || | ||| | Sbjct 3455 ATCGACGCGAGGTTGCATACAGCCACCTCATCCGAATCTGTGTACTCGATCACCTCACAG 3396 Query 213549 CACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAA 213608 |||| |||||| | ||||| || || |||||||| ||||| ||||| |||||| | Sbjct 3395 CACAAGTTGCTCGAGCGGATCGTACCGAGGTTCTGCTGGTTCGACTTGCGGTTGGCCGCG 3336 Query 213609 TCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAG 213668 |||||||| | |||||| || | || ||||| | ||| ||| | || || | |||| Sbjct 3335 TCCTTGTACAACATGTAAGGCGTACCCGTCTCGATCTGCGACTCGAGAATAGCGAACCAG 3276 Query 213669 AGGTACCTGGCCTTGACCAC----CCGCCTGACAGC---TCCGGGCGTAGCCTCGTACTG 213721 || ||| ||| ||| | || ||| ||| | ||| ||||||| Sbjct 3275 AG----CTG---CTGAGCACGGATGGTCTTGCGAGCCTTTCC---CTCAGCTTCGTACTT 3226 Query 213722 TTCGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCC-CGGACAGGATGCGG 213780 |||| | | | ||| || | |||||| |||| || || || | | ||| Sbjct 3225 GGCGTACAACGTCTCGAACTCTTCACCCCAGCAGCTGTAGAGGCCAGGGGCCTCGTTCGG 3166 Query 213781 GACACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCC 213840 | || | | |||||||| |||| | || | || |||||||| || |||| || Sbjct 3165 G-CAGAACAAACTCCAGTCGCCGTTCGATTCCACACGCTTCATGAACAAATCTGGGATCC 3107 Query 213841 ACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACT-CCAGAGTTTTTGCGCAGA 213899 ||| |||| ||| | || | | | | | || | || ||| || || Sbjct 3106 ACAACGCGTAGAATAAATCAC-GAGCACGGTGGAGCTCATTACCGTGGTTCTTCTTCAAG 3048 Query 213900 TCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGC 213959 || | || || ||||||||||||||||| ||||||| ||||||||| || | ||| Sbjct 3047 TCCAAGAACTCGAAGATGTCCGCGTGCCATGGCTCCAAGTAGATGGCGAACGAACCCTTG 2988 Query 213960 CTCTTG---CCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGT 214016 | |||| ||||||||||| || | ||| |||||| | |||| | || Sbjct 2987 CGCTTGCCTCCGCCCTGGTCAACGTAGCGAGCCGTGTCGTTGAACACACGCAACATTGGA 2928 Query 214017 ACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTG 214076 || || || || ||| |||||| || || || || | | ||| | | |||| Sbjct 2927 ACGAGACCATTCGACGATCCGTTCGTACCGCGAATGTAACTGTTAGTGGCACGGATGTTG 2868 Query 214077 CTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTC 214136 |||| || || || |||||||| |||||||||| |||||| | | | || Sbjct 2867 TGCATGCTGACACCGATACCACCGGCCCACTTGGAGATGCAAGCGCAGTTCTTGAGCGTG 2808 Query 214137 TCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGG 214196 || ||| || | ||| |||||| | | ||||||||||| ||| ||||| Sbjct 2807 TCATAGATACCCTCGATGGAGTCATCCTTCATAGCAAGCAAGAAGCACGACGATAGCTGA 2748 Query 214197 GGCCTGGACGAGCCAGAGTTGAA 214219 || | | || |||| |||||| Sbjct 2747 GGACGAGGCGTACCAGCGTTGAA 2725 >seq176 Length=73234 Score = 118 bits (130), Expect = 2e-21 Identities = 501/776 (65%), Gaps = 34/776 (4%) Strand=Plus/Minus Query 213470 CACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGT 213529 ||| |||| || |||||||| || |||||||| || || ||||| | || ||||| Sbjct 73084 CACGAACTTCGGTAGGGCGATCGACGCAAGGTTGCACACAGCGACCTCATCCGAATCTGT 73025 Query 213530 GTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTT 213589 |||||| || | ||| ||||| |||||| | ||||| || || |||||||| ||||| Sbjct 73024 GTACTCGATCACCTCACAGCACAAGTTGCTCGAGCGGATCGTACCGAGGTTCTGCTGGTT 72965 Query 213590 TGACTTTGCG-TTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGG 213648 ||| ||||| || || | ||||||||| ||||| || || | || ||||| | ||| | Sbjct 72964 CGAC-TTGCGATTCGCCGCATCCTTGTACAGCATATACGGCGTACCCGTCTCGATCTGTG 72906 Query 213649 ACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCAC----CCGCCTGACAGC---T 213701 || | || || | |||||| ||| ||| ||| | || ||| | Sbjct 72905 ACTCGAGGATGGCGAACCAGAG----CTG---CTGAGCACGGATGGTCTTGCGAGCCTTT 72853 Query 213702 CCGGGCGTAGCCTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCC 213761 || | ||| || |||| |||| | | | ||| || | ||||||| | || Sbjct 72852 CC---CTCAGCTTCATACTTGGCGTACAACGTCTCGAACTCCTCGCCCCAGCACTCGTAG 72796 Query 213762 AGTCCCGGACAGGATGCG---GGACACATGAGGCTCCAGTCCCCG-TCATCTCTGACTCT 213817 || || || | | || || || | | ||||| || ||| || ||| || | Sbjct 72795 AGACCTTGA---GCTTCGTTTGGGCAGAACAAACTCCATTCACCGTTCGCCTC-CACACG 72740 Query 213818 CTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTC 213877 || |||||||| || |||| ||||| | || || ||||| | | | | | Sbjct 72739 CTTCATGAACAAATCTGGGATCCACAACCCGTAAAAGAGGTCAC-GAGCACGATGGAGCT 72681 Query 213878 CACT-CCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCA 213936 || | || ||| || || || | || || ||||||||||||||||| ||||||| Sbjct 72680 CATTACCGTGGTTCTTCTTCAAGTCCAAGAACTCGAAGATGTCCGCGTGCCATGGCTCCA 72621 Query 213937 TGTAGATGGCAAAGGCGCCCGGCCTCTTG---CCGCCCTGGTCCACCAGCCTGGCCACCA 213993 ||||||||| || | ||| | |||| ||||||||||| || | ||| Sbjct 72620 AGTAGATGGCGAACGAACCCTTGCGCTTGCCTCCGCCCTGGTCAACGTAGCGAGCCGTGT 72561 Query 213994 TGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATAT 214053 |||||| | |||| | || || || || || ||| |||||| || || || | Sbjct 72560 CGTTGAACACACGCAACATTGGAACGAGACCATTCGACGATCCGTTCGTACCGCGAATGT 72501 Query 214054 ACGAGCCGGAGGCCCTCAGGTTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGA 214113 | | | ||| | | |||| ||| || || ||||||||||| ||||||||| Sbjct 72500 AACTGTTAGTGGCACGGATGTTGTGCATACTGATACCGATGCCACCGGCCCACTTGGAGA 72441 Query 214114 TCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCA 214173 | |||||| | | | || || ||| || | ||| |||||| | | | | Sbjct 72440 TAGATGCGCAGTTCTTGAGCGTGTCGTAGATACCCTCAATGGAGTCATCCTTCATGGCAA 72381 Query 214174 GCAAGAAGCAGCTCGAGAGCTG-GGGCCTGGACGAGCCAGAGTTGAAAAGCGTGGG 214228 ||||||| || ||| | ||| |||| ||| || || ||||||||||| || || Sbjct 72380 GCAAGAAACACGACGACAACTGAGGGCGTGG-CGTACCCGAGTTGAAAAGAGTTGG 72326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931524369628160