Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F001573145.1_202016-02-25] 724 sequences; 35,934,203 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq598 100 1e-16 seq176 98.7 5e-16 >seq598 Length=3624 Score = 100 bits (110), Expect = 1e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 25930 CTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTC 25989 || ||| || |||||||| ||||||| || || |||||||| | || | || Sbjct 3129 CTTCATGAACAAATCTGGGATCCACAACGCGTAGAATAAATCACGAGCACGGTGGAGCTC 3070 Query 25990 TTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAA 26049 || ||||| ||||| || | || ||||| || || || || | ||||||||| || || Sbjct 3069 ATTACCGTGGTTCTTCTTCAAGTCCAAGAACTCGAAGATGTCCGCGTGCCATGGCTCCAA 3010 Query 26050 ATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTC 26109 ||||| || || ||| || | || ||||| || || || ||||| | || || || Sbjct 3009 GTAGATGGCGAACGAACCCTTGCGCTTGCCTCCGCCCTGGTCAACGTAGCGAGCCGTGTC 2950 Query 26110 ATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGT 26157 ||||| || |||||||||||| | ||| | || ||||||| || Sbjct 2949 GTTGAACACACGCAACATTGGAACGAGACCATTCGACGATCCGTTCGT 2902 >seq176 Length=73234 Score = 98.7 bits (108), Expect = 5e-16 Identities = 183/269 (68%), Gaps = 0/269 (0%) Strand=Plus/Minus Query 25889 TTTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGGA 25948 ||||| ||||| ||| ||| ||| | || ||| || || ||| || |||||||| Sbjct 72780 TTTGGGCAGAACAAACTCCATTCACCGTTCGCCTCCACACGCTTCATGAACAAATCTGGG 72721 Query 25949 ATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTTT 26008 ||||||| | ||||| | || | || | || || ||||| ||||| || Sbjct 72720 ATCCACAACCCGTAAAAGAGGTCACGAGCACGATGGAGCTCATTACCGTGGTTCTTCTTC 72661 Query 26009 AGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACCT 26068 | || ||||| || || || || | ||||||||| || || ||||| || || ||| Sbjct 72660 AAGTCCAAGAACTCGAAGATGTCCGCGTGCCATGGCTCCAAGTAGATGGCGAACGAACCC 72601 Query 26069 TTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACATT 26128 || | || ||||| || || || ||||| | || || || ||||| || ||||||| Sbjct 72600 TTGCGCTTGCCTCCGCCCTGGTCAACGTAGCGAGCCGTGTCGTTGAACACACGCAACATT 72541 Query 26129 GGAACTAATCCAGTTGAAAATCCGTTTGT 26157 ||||| | ||| | || ||||||| || Sbjct 72540 GGAACGAGACCATTCGACGATCCGTTCGT 72512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253037767238300