Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F001573145.1_202016-02-25] 724 sequences; 35,934,203 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq176 233 2e-56 seq598 215 6e-51 seq715 174 2e-38 seq2 93.3 5e-14 >seq176 Length=73234 Score = 233 bits (258), Expect = 2e-56 Identities = 632/944 (67%), Gaps = 35/944 (4%) Strand=Plus/Plus Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCTTCAACGGCTCGATGGCATCCTCAT 75204 |||||||| |||| || || || | || | ||||| || | |||||| | || Sbjct 72152 TACTTTGGCTTCAAGACGCTGGA-ACGATCGTATCTCTTCCGCATTAATGGCAAGGTGAT 72210 Query 75205 GGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGA 75264 ||| |||||| | ||| || | || || |||||||||||| ||||| || | Sbjct 72211 GGAGCGTCCACAGCAGATGATCTTACGCGTGTGTATCGGCATCCACAAAGAAGATATCGC 72270 Query 75265 TTCTG-TCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAA 75323 || |||| ||| |||||| | ||||||||||| | |||| ||||| |||||| Sbjct 72271 CGGTGCTCTT-CAGATGTACGACTACATGTCCCAAGGCTTCTTCACTCACGGCTCACCAA 72329 Query 75324 CCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACA 75383 | || ||||| | ||||| ||| | || ||| |||| || ||| | | |||| | Sbjct 72330 CTCTTTTCAACTCGGGTACGCCACGCCCTCAGTTGTCGTCGTGTTTCTTGCTTGCCATGA 72389 Query 75384 AGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGT 75443 |||| ||||| || | |||||||| | || || | | | || || ||||| |||| Sbjct 72390 AGGATGACTCCATTGAGGGTATCTACGACACGCTCAAGAACTGCGCATCTATCTCCAAGT 72449 Query 75444 GGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGG 75503 |||| || || || || || || || | | | |||| ||| | ||||| | Sbjct 72450 GGGCCGGTGGCATCGGTATCAGTATGCACAACATCCGTGCCACTAACAGTTACATTCGCG 72509 Query 75504 GGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGC 75563 | || || || || ||||| | |||||||| | || || || |||| ||| || | Sbjct 72510 GTACGAACGGATCGTCGAATGGTCTCGTTCCAATGTTGCGTGTGTTCAACGACACGGCTC 72569 Query 75564 GCTATGTAAATCA-AGCGG-GGC-GTCGCAAGGGGTCCATCGCGGTCTACTTGGAACCAT 75620 |||| || | || |||| ||| |||||||| || |||| |||||||||| |||| Sbjct 72570 GCTACGTTGACCAGGGCGGAGGCAAGCGCAAGGGTTCGTTCGCCATCTACTTGGAGCCAT 72629 Query 75621 GGCATGCCGATATCATGGAGTTCCTTGAGTT-ACGACTCAACCAAGGTGACGAAGAGGCT 75679 |||| || || ||| | |||||| | || || | || ||||| ||| | || ||| Sbjct 72630 GGCACGCGGACATCTTCGAGTTCTTGGACTTGAAGA-AGAACCACGGTAATGA----GCT 72684 Query 75680 C---GGTG-TAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGT 75735 | ||| | | || ||||||| ||||||| ||||| | ||||||||||| || Sbjct 72685 CCATCGTGCTCGTGACCTCTTTTACGGGTTGTGGATCCCAGATTTGTTCATGAAGCGTGT 72744 Query 75736 TGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGA-CG 75794 |||| | ||| ||||| | | ||||| ||| || | || | |||||||| ||| | Sbjct 72745 GGAGGCGAACGGTGAATGGAGTTTGTTCTGCCCAAACGAAGCTCAAGGTCTCTACGAGTG 72804 Query 75795 CGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGC---CA 75851 | | ||| |||||||| || | | ||| | |||||||||| ||||| | || || Sbjct 72805 CTG-GGGCGAGGAGTTCGAGACGTTGTACGCCAAGTATGAAGCTGAGGGAAAGGCTCGCA 72863 Query 75852 ATGCGA-CTGTAC-CAGCCGCCGATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGAC 75909 | | | | || | |||| || | ||| || || ||| | ||||||| ||||| Sbjct 72864 AGACCATCCGTGCTCAGCAGC-----TCTGGTTCGCCATCCTCGAGTCACAGATCGAGAC 72918 Query 75910 TGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTT 75969 || || || |||||||| ||||||||||| || ||| ||||| |||| | Sbjct 72919 GGGTACGCCGTATATGCTGTACAAGGATGCGGCGAATCGCAAGTCGAACCAGCAGAACCT 72978 Query 75970 GGGAACAATCAAGAGCTCAA--ATCTT-TGCACGGAAATTTTAGAGTACACAGATAAGGA 76026 || || ||| |||| | | ||| ||| || | | |||||||||||| ||| Sbjct 72979 CGGTACGATC---CGCTCGAGCAACTTGTGCTGTGAGGTGATCGAGTACACAGATTCGGA 73035 Query 76027 TGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGT 76070 |||| ||||| ||||| | || || |||||||| || |||| Sbjct 73036 TGAGGTCGCTGTGTGCAACCTTGCGTCGATCGCCCTACCGAAGT 73079 >seq598 Length=3624 Score = 215 bits (238), Expect = 6e-51 Identities = 622/939 (66%), Gaps = 25/939 (3%) Strand=Plus/Plus Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTCAACGGCTCGATGGCATCCTCATG 75205 |||||||| |||| || ||||||||| || | | || | | ||||| | ||| Sbjct 2542 TACTTTGGCTTCAAGACGCTTGAGAAGTCGTACTTGCTGCGCATTGGTGGCAAGGTGATG 2601 Query 75206 GAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGAT 75265 || |||||| | ||| | |||| || || || |||||| ||||||||||| Sbjct 2602 GAGCGTCCACAGCAGATGATTTTGCGTGTGAGCATTGGTATCCACAAGGAAGACATTGCG 2661 Query 75266 TCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACC 75325 | | | ||||| ||||| | |||||||| | |||| ||||| || |||||| Sbjct 2662 GCGGCGCTCGAGACCTACGAATACATGTCCCAGAACTTCTTCACGCACGCGACGCCAACC 2721 Query 75326 CTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAG 75385 | ||||| |||||||| || | || ||| | || |||||| | | || | ||| Sbjct 2722 TTGTTCAACGCTGGTACGCCTCGTCCTCAGCTATCGTCGTGCTTCTTGCTTGCTATGAAG 2781 Query 75386 GAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGG 75445 || ||||| ||| | |||||||||| || || | | | || || ||||| |||||| Sbjct 2782 GATGACTCCATCGAGGGTATCTATGACACGCTCAAGAACTGCGCTTGCATCTCCAAGTGG 2841 Query 75446 GCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGG 75505 || || ||||| || | ||| || | | | |||| ||| | ||||| || Sbjct 2842 GCCGGTGGTATCGGTGTCAGCATGCACAACATCCGTGCCACTAACAGTTACATTCGCGGT 2901 Query 75506 ACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGC 75565 || || || || ||||| | |||||||| | || || || |||| ||| || ||| Sbjct 2902 ACGAACGGATCGTCGAATGGTCTCGTTCCAATGTTGCGTGTGTTCAACGACACGGCTCGC 2961 Query 75566 TATGTAAATCA-AGCGG-GGC-GTCGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGG 75622 || || | || |||| ||| |||||||| || |||| |||||||||| |||||| Sbjct 2962 TACGTTGACCAGGGCGGAGGCAAGCGCAAGGGTTCGTTCGCCATCTACTTGGAGCCATGG 3021 Query 75623 CATGCCGATATCATGGAGTTCCTTGAGTT-ACGACTCAACCAAGGTGACGAAGAGGCTCG 75681 || || || ||| | |||||| | || || | || ||||| ||| | | || | | Sbjct 3022 CACGCGGACATCTTCGAGTTCTTGGACTTGAAGA-AGAACCACGGTAATG-AGCTCCACC 3079 Query 75682 GTG-TAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGG 75740 ||| | | ||| | || | | ||||||| ||||| | ||||||||||| || || Sbjct 3080 GTGCTCGTGATTTATTCTACGCGTTGTGGATCCCAGATTTGTTCATGAAGCGTGTGGAAT 3139 Query 75741 AGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCT-CCGACGCGGTG 75799 | || | ||| | | ||||| || || |||| || || |||| | | || | | Sbjct 3140 CGAACGGCGACTGGAGTTTGTTCTGCCCGAACGAGGCCCCTGGCCTCTACAGCTGCTG-G 3198 Query 75800 GGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGC---CAATGCG 75856 ||||| ||||| || | | ||| | ||||| |||| ||||| | || ||| | Sbjct 3199 GGTGAAGAGTTCGAGACGTTGTACGCCAAGTACGAAGCTGAGGGAAAGGCTCGCAAGACC 3258 Query 75857 A-CTGTAC-CAGCCGCCGATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAA 75914 | | || | |||| || | ||| ||||||||| | || |||| ||||| || | Sbjct 3259 ATCCGTGCTCAGCAGC-----TCTGGTTCGCTATTCTCGAGTCGCAGATCGAGACGGGTA 3313 Query 75915 CACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAA 75974 | || || ||| | |||||||| || ||| ||| ||||| |||| | || | Sbjct 3314 CGCCTTACATGTTGTACAAGGACGCGGCCAACCGCAAGTCGAACCAGCAGAACCTCGGTA 3373 Query 75975 CAATCAAGAGCTCAA--ATCTT-TGCACGGAAATTTTAGAGTACACAGATAAGGATGAGA 76031 | ||| |||| | | ||| ||| || | | |||||||||||| ||||||| Sbjct 3374 CGATC---CGCTCGAGCAACTTGTGCTGTGAGGTGATCGAGTACACAGATTCGGATGAGG 3430 Query 76032 CGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGT 76070 |||||| ||||| | || || || || |||||||||| Sbjct 3431 TGGCTGTATGCAACCTCGCGTCGATTGCTCTTCCAAAGT 3469 >seq715 Length=275277 Score = 174 bits (192), Expect = 2e-38 Identities = 388/578 (67%), Gaps = 12/578 (2%) Strand=Plus/Plus Query 64945 TTGATTGACAAATACATTAAGGATGGATCTGAAAAGAAGCAGTTATTTGAAGCCATCCAA 65004 |||||||||| ||||| ||||||| | || ||||| || || || ||||| | Sbjct 110969 TTGATTGACACGTACATCAAGGATGCCGCCGAGAAGAACCACTTGTTCCGCGCCATTGAG 111028 Query 65005 ACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCT 65064 || | ||||| | |||||||||| || ||||| | |||| |||| || || Sbjct 111029 ACAATCCCATGCGTGCAGAAGAAGGCCAACTGGGCGCTCCGCTGGTGTGACTCAGAGAAC 111088 Query 65065 CGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGG 65124 | | || || ||||| | | || || || | ||||||||||||||||| || Sbjct 111089 GCCGCGTTTGCTGAGCGTGTCGTCGCCTTCGCTGCCATTGAGGGTATCTTCTTCTCGGGT 111148 Query 65125 TCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCA 65184 || |||||| | | | ||| | |||||||| ||||||||||| ||||| ||||||| Sbjct 111149 TCGTTCTGCTCGGTCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGCCTCAGCTTCTCG 111208 Query 65185 AATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAG 65244 || || ||||| || || || ||||||||| || || ||| ||||| ||| Sbjct 111209 AACGAGCTTATCAGTCGTGACGAAGGTCTCCACTGTGACTTCGCCTGCTTGCTCTACAAC 111268 Query 65245 A--CTTTGCGTAATAGACCCACTACC-GAAAC---TATCCACGCCATCGTGAAAGAGGCG 65298 | ||| || | ||| || || || | ||||||| || || | || || Sbjct 111269 AAGCTT---GTCA---ACCGTCTCCCAGAGTCGCGAATCCACGAGATTGTCAGTGATGCC 111322 Query 65299 GTTGAGATTGAGAAAGGGTTCATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAAC 65358 || ||| ||||| | |||| || |||| | |||||| | || |||||||||||| Sbjct 111323 GTCACGATCGAGAAGGAGTTCGTCAAGGACTCGCTCCCAGTCGAGCTTATCGGTATGAAC 111382 Query 65359 TCTGAGAAGATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGG 65418 || | | |||| | ||||||| |||| || | |||||||| ||| | |||| Sbjct 111383 TCGGCGCTCATGTGCCAGTACATCGAGTTCGTCGCTGATCGTCTTCTCCACGCTCTTGGT 111442 Query 65419 GTGCCACCCATTTGGAACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGAT 65478 || | || | |||||| || |||||||||| ||||| | || || | Sbjct 111443 GTCTCGAAGATCTACAACGCGTCTAACCCATTTGACTGGATGGATATGATCTCGCTCCAG 111502 Query 65479 GGGAAGACCAACTTCTTTGAGAAGCGAGTTGGGGACTA 65516 || |||||||||||||| |||||||| ||||| || || Sbjct 111503 GGCAAGACCAACTTCTTCGAGAAGCGTGTTGGTGAATA 111540 >seq2 Length=488588 Score = 93.3 bits (102), Expect = 5e-14 Identities = 173/246 (70%), Gaps = 6/246 (2%) Strand=Plus/Minus Query 14363 GATGGTCTCAAGCCTTCACAGAGGAAAGTGATGTATGCTTGCTTCCATAAGAATCTCAAG 14422 |||||||||||| |||||| | || ||| ||| ||||| || | || |||| | Sbjct 275162 GATGGTCTCAAGGTATCACAGCGTAAGGTGTTGTTCGCTTGTCTCAAGCGAAAACTCACG 275103 Query 14423 GATGAAATGAAGGTGGCACAACTGGCGGCATA-TGTCGCGGACAAGTCTGCGTACCACCA 14481 | ||| | |||||||| || || |||| || ||| | | || | || |||||||| Sbjct 275102 AAGGAAGTCAAGGTGGCGCAGCTCGCGGGTTACTGTAGTGAGCATA-CGGCATACCACCA 275044 Query 14482 TGGTGAAGTATC-CTTAGCGGACACGATTGTTAAGTTGGCAAACGACTACACGGGTTCAA 14540 ||||||| ||| ||| | | || ||||| || |||| | |||||| ||| | | Sbjct 275043 CGGTGAAGCATCACTTCACTCA-ACAATTGTGAATATGGCGCAGGACTACGTTGGTGCGA 274985 Query 14541 ACAACATTAACCTT-CTTGAACCGTGTGGTCAATTTGGTACGCGTCTCATGGGTGGTAAG 14599 ||||| || | || || | || | |||||||| |||||||| || |||||||||| Sbjct 274984 ACAAC-TTGCCATTGCTCTACCCTTCGGGTCAATTCGGTACGCGACTTCAGGGTGGTAAG 274926 Query 14600 GATGCT 14605 |||||| Sbjct 274925 GATGCT 274920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596564201045120