Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F001573145.1_202016-02-25] 724 sequences; 35,934,203 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq13 129 2e-24 seq183 109 2e-18 seq4 102 2e-16 seq141 95.1 4e-14 >seq13 Length=240350 Score = 129 bits (142), Expect = 2e-24 Identities = 208/296 (70%), Gaps = 10/296 (3%) Strand=Plus/Plus Query 302553 ATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGT 302612 |||||||| | |||| | ||||| ||| | || ||||||||||| |||||||| Sbjct 80236 ATCATAACGAGTCATGACCGACTCCATGGCCTTCACCAATCGACGCTGAATGTAACCAGT 80295 Query 302613 TGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAA 302672 | | ||| || || |||||||| || | ||| |||||||||||||||| |||||||| Sbjct 80296 TTCGGCTGTCTTGACGGCTGTATCGATCAAACCTTCACGACCACCCATAGCGTGGAAGAA 80355 Query 302673 TAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG 302732 | |||| || ||| ||| | | ||| | || |||||||| || || || Sbjct 80356 GAATTCTTGAGGCGTTAGACCCTTCAAGTACGAGTTTTCGACGAAACCTCGACTTTCAGG 80415 Query 302733 ---CGAATCGTCGAACTTG--GTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGG 302787 | |||| || |||| |||| |||||||| || | | | ||||| || Sbjct 80416 ACCCAAATCATC---CTTGCCGTAA--TGTGGCAGTGTTCGACGGTTGAAACCGTACGGA 80470 Query 302788 ATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 |||||||| || || ||||||||||| |||| |||| ||| ||||||||||| || Sbjct 80471 ATACGCTTGCCTTCGACGTTCTGCTGACCCACACACGCAATAATCTGCGAAATGTT 80526 >seq183 Length=69828 Score = 109 bits (120), Expect = 2e-18 Identities = 173/248 (70%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 251413 CCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTTG 251472 ||||| | | ||| || || || | ||| ||||| || | | | || ||| || || Sbjct 29937 CCACAGATGTCACAGACGTGCACACGGTAGGCATCCGAGTTGGCGAACAGTCGATCCATG 29996 Query 251473 GTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGA 251532 |||| | | |||||| ||||||| |||||||||||||| ||||| | ||| | | Sbjct 29997 AGGAAGTTCGCCGAACCGTGAGAAATCAAGCAATCACGCTCCATCTCACCCATACGCAAA 30056 Query 251533 CCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATG 251592 ||||| || ||||| | ||| || ||||||||| || || | || ||||| Sbjct 30057 CCACCTTCACGAGCACGACCTTCCATAGGCTGACGGGTAAGCATCGTCACTGGACCACGC 30116 Query 251593 GAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCG 251652 || || || ||| || | ||||||||||| | |||||||||||| | |||||| Sbjct 30117 GAACGCGAGTGGATCTTGTCGTCGACCATATGCTTCAAACGCTGGTAGAAAGTAGGACCG 30176 Query 251653 ATGAAGAT 251660 |||||||| Sbjct 30177 ATGAAGAT 30184 >seq4 Length=313877 Score = 102 bits (112), Expect = 2e-16 Identities = 100/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 354006 AATTGCTGTGGCGAGAGCACCAAGCGAGTCACGGTCGAGGAAATTAGTAGGTTCGTCAAG 354065 ||| || ||||| |||||||| |||||||||||||| | | | ||||||||||| || || Sbjct 172832 AATGGCAGTGGCAAGAGCACCGAGCGAGTCACGGTCCAAGTAGTTAGTAGGTTCATCGAG 172773 Query 354066 GATAAGAACGTGCGGCTCCATCCACATTGCTGCAGCCAGAACTACCTTAACCTTCTGTCC 354125 | ||||| ||| || | | |||||| || ||| ||| || ||||| |||||||| || Sbjct 172772 CACAAGAATGTGAGGGTTGAGCCACATGGCGGCACCCAACACAACCTTCACCTTCTGACC 172713 Query 354126 GCCTGATAG 354134 || || || Sbjct 172712 ACCCGAAAG 172704 >seq141 Length=89168 Score = 95.1 bits (104), Expect = 4e-14 Identities = 127/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 60169 GTCCTTGCCACCCATAAGACGGGTTCCAAATTGTCCGTTTGGCTGGAATAGATTAATGTT 60228 ||||||||| ||||| | || || || || || ||||||||| || | ||| ||||| Sbjct 24547 GTCCTTGCCTCCCATCAATCGCGTACCGAACTGACCGTTTGGCGAGAGCAAATTGATGTT 24488 Query 60229 GTTAGAGCCTACGAAATTTTGAGCGAGACCAACAATAGCACCATTTAAACTGGCTTCACC 60288 ||| ||| ||||| | ||| || | ||||| | ||| | || ||| || ||||| Sbjct 24487 GTTGCTGCCCACGAAGTCTTGCGCCATGTTGACAATTGTACCGTATATACTTGCCTCACC 24428 Query 60289 GTGATGATATCCAGAATGTTCTGAAACATATCCACTGAATTGTGCGACTTTAATTTC 60345 |||||| || | ||||| || || || ||||| | | ||| ||||| || ||||| Sbjct 24427 GTGATGGTAAGCCGAATGCTCCGAGACGTATCCTCCAAGTTGGGCGACCTTGATTTC 24371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471803947051988