Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F001573145.1_202016-02-25] 724 sequences; 35,934,203 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq56 120 3e-22 seq52 118 1e-21 seq598 109 5e-19 >seq56 Length=164687 Score = 120 bits (132), Expect = 3e-22 Identities = 175/245 (71%), Gaps = 2/245 (1%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCA- 24761 ||||||||||||| | || || || || || || || || |||||||| || | ||||| Sbjct 65525 GATGCAGATCTTTGTGAAGACTCTGACGGGCAAGACCATCACGCTCGATGTCG-AGCCAT 65583 Query 24762 CCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATC 24821 | |||| | || | || || || |||||||| ||||| |||||||| || || || | Sbjct 65584 CGGACAGCATTGACAACGTCAAGCAGAAGATCCAGGACAAGGAAGGAATTCCACCAGACC 65643 Query 24822 AACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATA 24881 | || ||| ||||||| ||||| || ||||| ||||| | | | || || || | Sbjct 65644 AGCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACTACA 65703 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAACTGAGC 24941 |||| || ||||| ||||| | ||||||||| | || | || || || | | || | Sbjct 65704 ACATCCAGAAGGAGTCGACCTTGCACTTGGTGCTCCGTCTTCGTGGTGGTGCCATCGAAC 65763 Query 24942 CAACG 24946 ||||| Sbjct 65764 CAACG 65768 >seq52 Length=165522 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || ||| | || ||||| || || ||||| || || || | | Sbjct 28796 GATGCAGATCTTCGTGAAGACGTTGACGGGTAAGACGATCACGCTTGACGTCGAGCCTTC 28855 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||| | | || | || || || |||||||| ||||| || || || ||||| ||||| Sbjct 28856 GGACTCGATTGACAACGTGAAGCAGAAGATCCAGGACAAGGAGGGTATTCCTCCAGATCA 28915 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || || ||||||||||| || || ||||| ||||| | | | | || || || || Sbjct 28916 GCAGCGATTGATCTTTGCTGGCAAGCAGCTCGAGGACGGTCGCACCCTCTCGGACTACAA 28975 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| || ||||| || || | ||||||||| | || ||||| || || Sbjct 28976 CATCCAGAAGGAGTCTACGTTGCACTTGGTGCTCCGCTTGCGTGGTGG 29023 Score = 111 bits (122), Expect = 1e-19 Identities = 151/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || || || || || || |||||| | || || || | | Sbjct 10828 GATGCAGATCTTCGTCAAGACACTCACGGGCAAGACCATTACGTTGGACGTCGAGCCTTC 10769 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||| | | || | || || || |||||||| ||||| ||||| || ||||| ||||| Sbjct 10768 GGACTCGATTGACAATGTCAAGCAGAAGATCCAGGACAAGGAAGGCATTCCTCCAGATCA 10709 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || || ||||||||||| || || ||||| ||||| | | | | || || || || Sbjct 10708 GCAGCGATTGATCTTTGCTGGTAAGCAGCTCGAGGACGGCCGTACCCTCTCGGACTACAA 10649 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTG 24913 ||| || ||||| || || | ||||||||| Sbjct 10648 CATCCAGAAGGAGTCTACGTTGCACTTGGTG 10618 >seq598 Length=3624 Score = 109 bits (120), Expect = 5e-19 Identities = 336/515 (65%), Gaps = 11/515 (2%) Strand=Plus/Minus Query 139388 CGCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAAT 139447 ||||||||| | || ||| ||||||||| ||| || |||||||| ||| | | |||| Sbjct 3148 CGCCGTTCGATTCCACACGCTTCATGAACAAATCTGGGATCCACAACGCGTAGAATAAAT 3089 Query 139448 CGCGCGCCTTCTTATCTTCCGAACCCATGTTACGTTTCATGTTAAGGAAATCAAAAACGT 139507 | || || | || ||| ||| |||| || | ||| || || | || Sbjct 3088 CACGAGCACGGTGGAGCTCATTACCGTGGTTCTTCTTCAAGTCCAAGAACTCGAAGATGT 3029 Query 139508 CAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCGTTTGCCACCT---TGAT 139564 | ||||||||||| |||| |||||||| | | || || || ||||| || || | Sbjct 3028 CCGCGTGCCATGGCTCCAAGTAGATGGCGAACGAACCCTTGCGCTTGCCTCCGCCCTGGT 2969 Query 139565 CGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGTTC 139624 | |||| || | | | ||||| || |||||||| || | ||||| ||| | || Sbjct 2968 CAACGTAGCGAGCCGTGTCGTTGAACACACGCAACATTGGAACGAGACCATTCGACGATC 2909 Query 139625 CGTTGGTGCTACGGATGGGACTGTTGCGAGCTCGGACGTCATGTACAT--TGATGCCGAT 139682 |||| || | || ||| |||||| || |||| || ||| ||| ||| ||||| Sbjct 2908 CGTTCGTACCGCGAATGTAACTGTTAGTGGCACGGATGT--TGTGCATGCTGACACCGAT 2851 Query 139683 TCCGCCGCCAAATTTGGATATTAAAACGCAATCGCGTAATGTCTCGTATATACCTCTTAT 139742 || ||| | | ||||| || || |||| | | || || || ||||| || Sbjct 2850 ACCACCGGCCCACTTGGAGATGCAAGCGCAGTTCTTGAGCGTGTCATAGATACCCTCGAT 2791 Query 139743 GCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCCGGC 139802 | ||| |||| ||| | | || ||||| ||||| || || || | ||| || || Sbjct 2790 GGAGTCATCCTTCATAGCAAGCAAGAAGCACGACGATAGCTGAGGACGAGGCGTACCAGC 2731 Query 139803 TGCAAACAGAGTAGGACTCGCGTGCGTGAACATTTGTTTCGACATCAATTCGTACGTTTC 139862 |||| || || ||||||||||||| | | | ||||| ||||||| || || Sbjct 2730 GTTGAACAAGGTTGGCGTCGCGTGCGTGAAGAAGTTCTGGGACATGTATTCGTAGGTCTC 2671 Query 139863 GATGGCGCTCACAATATC--CCTTCCGTGGATACC 139895 || || | |||| || |||| ||||||||| Sbjct 2670 GAGCGCCGCCGCAATGTCTTCCTT--GTGGATACC 2638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449893528426720