Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F001573145.1_202016-02-25] 724 sequences; 35,934,203 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq89 244 2e-58 seq715 197 2e-44 seq53 152 8e-31 seq598 136 6e-26 seq303 109 9e-18 seq176 102 1e-15 seq8 87.8 3e-11 >seq89 Length=119689 Score = 244 bits (270), Expect = 2e-58 Identities = 350/483 (72%), Gaps = 10/483 (2%) Strand=Plus/Minus Query 2018916 CCGTGGATCGAAAAGTACCGCCCGACAGT-GCTCGACGACATCGTGGGCAACGAGC-ACG 2018973 |||||| | || |||||||| ||| ||| ||||| ||| ||||||||||| ||| || Sbjct 90036 CCGTGGGTGGAGAAGTACCGTCCG-CAGACGCTCGCCGATGTCGTGGGCAAC-AGCGACA 89979 Query 2018974 CCGTTGCCTACCTCAAGGCGCTGGCCGCCGACGGCAACATGCCCAACCTCTTGCTGGCGG 2019033 || | | || || ||| |||| ||||||||||||| |||||||| | | ||| Sbjct 89978 CCATCGACTCGCTGCGGGCCATGGCGCGCGACGGCAACATGACCAACCTCATCATCTCGG 89919 Query 2019034 GCCCGCCCGGCACGGGCAAGACCACGAGCATCGCGTGCCTGGCGCGCGTGCTCTTGGGCG 2019093 ||||||| |||||||||||||||||| |||| || || || |||| | | | ||| Sbjct 89918 GCCCGCCAGGCACGGGCAAGACCACGTCCATCCTCTGTCTCGCCCGCGAGTTGCTCGGCA 89859 Query 2019094 CGGCCGCCGACGAGGCCGTGCTCGAACTCAATGCGTCAGACGAGCGCGGCGTGGACGTCG 2019153 || | | ||||||||||||| ||||| || || ||||| |||||| | ||| | Sbjct 89858 CGAGCATGAAGCAGGCCGTGCTCGAGCTCAACGCCTCCGACGACCGCGGCATCGACACGG 89799 Query 2019154 TGCGTAGAATCATCAAGCA--TCACGCTTCGAAAAGAATCGACCTGCCGCCCGGCCGCCA 2019211 |||| | | |||||| || ||| | ||| | || ||||| || || ||||| Sbjct 89798 TGCGCAACAAGATCAAGATGTTCGCGCAGCAAAAGGTGACG--CTGCCCCCTGGACGCCA 89741 Query 2019212 CAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGGCCCAGCAGGCCCTCCG 2019271 |||| | | |||||||| || || ||| || | ||| ||||||| |||||||| || || Sbjct 89740 CAAGATCGTGATCCTCGACGAAGCTGACAGCATGACGGCGGCGGCGCAGCAGGCGCTGCG 89681 Query 2019272 ATCGACC-ATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGGCCTGCAACACGTCGT 2019330 |||| | ||||| | | | | ||| |||||||| |||||||| || |||| ||| Sbjct 89680 -TCGAACGATGGAGATCTTCTCGTCCACCACGCGGTTCGCGCTGGCGTGTAACAACTCGA 89622 Query 2019331 CGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGCTTTGCGCGCCTCACCG 2019390 | | | ||||||| | ||||||| || ||||||||||||||||| |||| |||| | Sbjct 89621 CCAAGATCATCGAGCCGATCCAGAGTCGCTGCGCCATCTTGCGCTTCACGCGACTCAAGG 89562 Query 2019391 ACG 2019393 ||| Sbjct 89561 ACG 89559 >seq715 Length=275277 Score = 197 bits (218), Expect = 2e-44 Identities = 241/328 (73%), Gaps = 3/328 (1%) Strand=Plus/Minus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||||||||| |||||||| | ||||| |||| |||||| |||||||| || ||||| Sbjct 111235 ACCTTCGTCACGACTGATAAGCTCGTTCGAGAAGCTGAGGCCAGGCATGAGACCACGCTT 111176 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 ||||||||| |||| | ||||| |||||||| ||||| ||||| | ||| || || Sbjct 111175 CTTGAGCCAGAAGACCGAGCAGAACGAACCCGAGAAGAAGATACCCTCAATGGCAGCGAA 111116 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCA 794519 | |||||| ||||| ||||| | | | | |||| || ||| | |||||| Sbjct 111115 GGCGACGACACGCTCAGCAAACGCGGC---GTTCTCTGAGTCACACCAGCGGAGCGCCCA 111059 Query 794520 CTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTC 794579 | ||||| ||| ||| | || | || || |||||||| || | ||||| |||||| Sbjct 111058 GTTGGCCTTCTTCTGCACGCATGGGATTGTCTCAATGGCGCGGAACAAGTGGTTCTTCTC 110999 Query 794580 GACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTC 794639 | | | ||||||| ||| ||||| || | |||||||| | || ||||||||||| || Sbjct 110998 GGCGGCATCCTTGATGTACGTGTCAATCAACAGCGAGTACATTTCCGAGTGGATGTTCTC 110939 Query 794640 GATGGCGATCTGGAAGCCATAAAAGCAG 794667 ||||| ||||||||||| || |||||| Sbjct 110938 AATGGCAATCTGGAAGCCGTAGAAGCAG 110911 Score = 183 bits (202), Expect = 5e-40 Identities = 244/332 (73%), Gaps = 14/332 (4%) Strand=Plus/Minus Query 793892 GACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAG 793951 ||| |||||||||| || || || || ||| |||||| |||||||||||||||| ||| Sbjct 111556 GACACCCGCCTTGGAGTATTCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAG 111497 Query 793952 CGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCG-CACCC-G 794009 |||||||| |||||||| || ||||| | || |||| |||| | |||| | Sbjct 111496 CGAGATCATATCCATCCAGTCAAATGGGTTAGACGCGTTGTAGATCTTCGAGACACCAAG 111437 Query 794010 AGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTC 794069 |||| | || || || || |||||||| || ||||||||||||||||| || | |||| Sbjct 111436 AGCGTGG--AGAAGACGATCAGCGACGAACTCGATGTACTGGCACATGAGCGCCGAGTTC 111379 Query 794070 ATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCC 794129 || ||||| ||| | || || ||||| || |||| ||||| ||||||||| |||||| Sbjct 111378 ATACCGATAAGCTCGACTGGGAGCGAGTCCTTGACGAACTCCTTCTCGATCGTGACGGCA 111319 Query 794130 TCGATGATGATCTGCCTGG----GC-ACGTCGGACGACGGCTTGTCGACGAGCATCGTGT 794184 || ||| |||| | ||| || || || |||| || ||| ||| | ||| Sbjct 111318 TCACTGACAATCT-CGTGGATTCGCGACTCTGGGAGACG----GTTGACAAGCTTGTTGT 111264 Query 794185 AGAGCAGGCAGGCAAAGTCGCAATGCAGACCT 794216 |||||| |||||| ||||| || || |||||| Sbjct 111263 AGAGCAAGCAGGCGAAGTCACAGTGGAGACCT 111232 Score = 141 bits (156), Expect = 1e-27 Identities = 199/278 (72%), Gaps = 6/278 (2%) Strand=Plus/Minus Query 796141 AAACACCTGGCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCC 796200 || || | ||| || || || ||||| || || ||||| ||| |||||||| | Sbjct 110916 AAGCAGCGGGCTTCAGGCACCTGGACTTCGTTGCTGAAGTTCATGGCAAGGTTCTCGTTC 110857 Query 796201 ACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCG 796260 || || || || ||||| ||||| || ||||| ||||||||||| ||||||||||| | | Sbjct 110856 ACAATACCATCACTGGCAGCGAAGAACGCGAGCACGTGCTTGATGAAGTGACGCTCATTG 110797 Query 796261 TCGCTGAGCGAGACCCAGTGGACCGTGTCGGCGC---CGAGGTCGACCTCCTCGGCGGTC 796317 ||| | | | |||||| || || | || | || |||| ||||||| | ||| Sbjct 110796 TCGGTCATGTTGCCCCAGT---CCTTGAGGTCGTGCACAAGATCGATCTCCTCGACCGTC 110740 Query 796318 CAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAAC 796377 || ||| ||| || ||||| |||||||| ||||| ||| | | |||| ||||| Sbjct 110739 CAGAAGCTGGCTTCCGCCTTCTTGTACATATCCCAGATCTCCTTCTCCTGGATCGGGAAG 110680 Query 796378 AGAACAAAGCGATTGGGGTTCTCGCGTAGCAGCGGCTC 796415 || || || || || ||||||||||| ||||| ||||| Sbjct 110679 AGCACGAATCGGTTTGGGTTCTCGCGAAGCAGAGGCTC 110642 >seq53 Length=165460 Score = 152 bits (168), Expect = 8e-31 Identities = 191/259 (74%), Gaps = 6/259 (2%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| || ||||||||||| || |||||||||||| |||||| || || | | Sbjct 110719 TGTACTTGGTCACAGCCTTGGTACCTTCCGAGACGGCGTGCTTGGCCAACTCACCAGGGA 110778 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGG-TGCC--GATCGTGTTGCGCTTGTTAG 1485586 || || ||||||||||||||||| ||||||| | | | ||| || |||||| Sbjct 110779 GCATGAGACGCACGGCGGTCTGGATTTCGCGGGACGACAAGGTCGACTT---CTTGTTGT 110835 Query 1485587 TGCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGT 1485646 |||| || ||||||||| | | | ||||| |||| |||||||||| ||||||| Sbjct 110836 AACGCGAGAGCTTGCCGGCCTCCGAGGCAATGCGCTCGAAAATGTCGTTGATGAACGAGT 110895 Query 1485647 TCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCT 1485706 ||||||||||||| |||||||| || || ||||||||||| | ||||| Sbjct 110896 TCATGATCGACATACCGCGCTTGGAGATACCGGTCTCAGGGTGCACCTGACGCAACACCT 110955 Query 1485707 TGTAAACAAAGGACGAGTA 1485725 |||| | ||| |||||| Sbjct 110956 TGTAGATGTAGGTCGAGTA 110974 Score = 149 bits (164), Expect = 1e-29 Identities = 190/259 (73%), Gaps = 6/259 (2%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| |||||||||||||| || |||||||| ||| |||||| || || | | Sbjct 3101 TGTACTTGGTAACGGCCTTGGTACCTTCCGAGACGGCATGCTTGGCCAACTCACCAGGGA 3160 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGG-TGCC--GATCGTGTTGCGCTTGTTAG 1485586 || || ||||| ||||||||||| ||||||| | | | ||| || |||||| Sbjct 3161 GCATGAGACGCACAGCGGTCTGGATTTCGCGGGACGACAAGGTCGACTT---CTTGTTGT 3217 Query 1485587 TGCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGT 1485646 |||| || ||||||||| | | | ||||| |||| |||||||||| ||||||| Sbjct 3218 AACGCGAGAGCTTGCCGGCCTCCGAGGCAATGCGCTCGAAAATGTCGTTGATGAACGAGT 3277 Query 1485647 TCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCT 1485706 ||||||||||||| |||||||| || || ||||||||||| | ||||| Sbjct 3278 TCATGATCGACATACCGCGCTTGGAGATACCGGTCTCAGGGTGCACCTGACGCAACACCT 3337 Query 1485707 TGTAAACAAAGGACGAGTA 1485725 |||| | ||| |||||| Sbjct 3338 TGTAGATGTAGGTCGAGTA 3356 >seq598 Length=3624 Score = 136 bits (150), Expect = 6e-26 Identities = 216/310 (70%), Gaps = 0/310 (0%) Strand=Plus/Minus Query 2073537 GCACTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTT 2073596 || |||||| || ||||| ||||||||||| || || || | ||| || || || || || Sbjct 2976 GCCCTGGTCAACGTAGCGAGCCGTGTCGTTGAACACACGCAACATTGGAACGAGACCATT 2917 Query 2073597 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAA 2073656 ||| ||||| || || | ||| | | ||| || | |||||| | | Sbjct 2916 CGACGATCCGTTCGTACCGCGAATGTAACTGTTAGTGGCACGGATGTTGTGCATGCTGAC 2857 Query 2073657 GCCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCC 2073716 ||||| || |||||| |||||||||| ||||| || || ||||| || ||||| || Sbjct 2856 ACCGATACCACCGGCCCACTTGGAGATGCAAGCGCAGTTCTTGAGCGTGTCATAGATACC 2797 Query 2073717 CTCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGT 2073776 |||||| ||||| ||||||| | | || ||||||||||| || || || | ||| Sbjct 2796 CTCGATGGAGTCATCCTTCATAGCAAGCAAGAAGCACGACGATAGCTGAGGACGAGGCGT 2737 Query 2073777 GCCGGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTA 2073836 || || ||||| | || |||||||| |||| | | | ||||||||| ||||| Sbjct 2736 ACCAGCGTTGAACAAGGTTGGCGTCGCGTGCGTGAAGAAGTTCTGGGACATGTATTCGTA 2677 Query 2073837 GGTGGCGAGC 2073846 ||| ||||| Sbjct 2676 GGTCTCGAGC 2667 Score = 104 bits (114), Expect = 4e-16 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 2071801 AGGCCGGGCGCCTCGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACGCGGCGC 2071860 ||||| || |||||| |||||| || | |||||||||| | |||| || | Sbjct 3185 AGGCCAGGGGCCTCGTTCGGGCAGAACAAACTCCAGTCGCCGTTCGATTCCACACGCTTC 3126 Query 2071861 ATAAACAGGTCGCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTG 2071920 || |||| || |||||| |||| || | ||| || || |||| ||| || Sbjct 3125 ATGAACAAATCTGGGATCCACAACGCGTAGAATAAATCACGAGCACGGTGGAGCTCATTA 3066 Query 2071921 CCGTGGTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAG 2071980 ||||||||||| |||| ||| | | |||| || ||| |||||||| ||||||| |||| Sbjct 3065 CCGTGGTTCTTCTTCAAGTCCAAGAACTCGAAGATGTCCGCGTGCCATGGCTCCAAGTAG 3006 Query 2071981 CAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 2072012 ||| || | |||||||||||||| ||||| Sbjct 3005 ATGGCGAACGAACCCTTGCGCTTGCCTCCGCC 2974 >seq303 Length=25634 Score = 109 bits (120), Expect = 9e-18 Identities = 297/447 (66%), Gaps = 6/447 (1%) Strand=Plus/Plus Query 118595 GCGCGTGACCGTGTTTGACCCGTTCTTGCGCACGCCGCGCATGCACACGCACATGTGGAG 118654 || |||||| ||| | | ||| |||| || || |||||| || ||||||||| Sbjct 15990 GCTCGTGACGGTGCTCGCACCGCTCTTCTCGACACCACGCATGACCATGCACATGTGCGT 16049 Query 118655 GCCCTCGAGCACGACGCCGACGCCGCGCGCGCCCG-TGACCTCGCTGAT-GCTCTCGGCG 118712 | |||||| ||| ||| | ||||| | | || | | || | |||| || ||| | Sbjct 16050 GGCCTCGATCACCACGGCCACGCC-CTTGGGCTGGATTACGCCCATGATCGCGTTCG-CA 16107 Query 118713 ATCTGGCGCGTGAGCGCCTCCTGCACCTGGAAGCGGTCCGAGAGCATGTCGACGATGCGC 118772 ||||| || || |||||| || || || || ||| | || || ||||||| Sbjct 16108 ATCTGCTTGGTCAGGCGCTCCTGTACTTGCAATCGACGCGAAAACACCTCCGAGATGCGC 16167 Query 118773 GGGATCTTGCTCAGGCCGATGATCCTGCCCGCGGGCAGGTAGCCCACGTGCGCCTTGCCG 118832 | || |||||||| || | | |||| || | ||| || | |||| ||||||| Sbjct 16168 GCGAGCTTGCTCAAACCCAGCACTTTGCCGTTTGGAATGTACCCAATGTGCACCTTGCCC 16227 Query 118833 ATAAAGGGCAGCAGATGGTGCTCGCACATGGAGAAAAAGTCAATGTCGCGCACGGTCACC 118892 | ||||||| || || ||||||||||||||| | | |||||||||||||||| | ||| Sbjct 16228 GTGAAGGGCACCATGTGATGCTCGCACATGGAGTAGAGGTCAATGTCGCGCACGATGACC 16287 Query 118893 ATCTCGCCCGACGTC-TCGGCAAAGAGGGCGTCGCCGACGGCCTCGGCCAGGGTCAGGCG 118951 || ||| || ||| || |||| | || ||| | |||| ||||| || | Sbjct 16288 ATTTCG-TCGTGGTCTTCTTCAAACACCGCCTCGTTCAACACCTCCTCCAGGCTCTGCGC 16346 Query 118952 GTGGCCGCGCGTGCGCTCCACCATGGCCTTGGCCACGCGCATGGGCGTGTCCAAGAGGCC 119011 | ||| ||| || || |||||||||| ||| ||| || | ||| || || Sbjct 16347 ATAGCCCTTGGTGTTGAACAGCAGCGCCTTGGCCATACGCTCGGGTGTCTTCAACAGACC 16406 Query 119012 CTCGCGCGCCACGTCCTCGCCCAGACA 119038 ||||||| | |||||||| | ||| Sbjct 16407 CTCGCGCTCTGGATCCTCGCCAATACA 16433 >seq176 Length=73234 Score = 102 bits (112), Expect = 1e-15 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 2071877 TCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTCA 2071936 |||||| ||||||||||| || || || || | ||| || ||||||||||| |||| Sbjct 72719 TCCACAACCCGTAAAAGAGGTCACGAGCACGATGGAGCTCATTACCGTGGTTCTTCTTCA 72660 Query 2071937 GGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCT 2071996 ||| | | |||| || ||| |||||||| ||||||| |||| ||| || | |||| Sbjct 72659 AGTCCAAGAACTCGAAGATGTCCGCGTGCCATGGCTCCAAGTAGATGGCGAACGAACCCT 72600 Query 2071997 TGCGCTTGCCGCCGCC 2072012 |||||||||| ||||| Sbjct 72599 TGCGCTTGCCTCCGCC 72584 >seq8 Length=308004 Score = 87.8 bits (96), Expect = 3e-11 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 1703794 TACAACGGATGCCATGGATGGCGCCGCCGCTTACGACCACCTCGACGTCGTCAAGTGGCT 1703853 ||||||||| |||||||||||||| || ||| | | || |||| |||||||||| || Sbjct 94571 TACAACGGAGGCCATGGATGGCGCTGCTGCTAATGGGCATTTCGATGTCGTCAAGTTTCT 94630 Query 1703854 CCACGAGAATCGCACCGAGGGATGCGCGACTGCCGCCATGGATAGCGCCGC 1703904 ||||| || || || || |||||| |||| || || ||||| || || || Sbjct 94631 TCACGACAACCGGACAGAAGGATGCACGACGGCAGCAATGGACAGAGCAGC 94681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916169384817836