Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F001573145.1_202016-02-25] 724 sequences; 35,934,203 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq56 140 2e-28 seq52 127 1e-24 >seq56 Length=164687 Score = 140 bits (154), Expect = 2e-28 Identities = 162/217 (75%), Gaps = 10/217 (5%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||| | ||| ||||||||| ||||| |||||||| || |||| | || Sbjct 65737 AGCACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCC 65678 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| |||||||||||||| || ||||||||| | || | || |||||||| Sbjct 65677 TCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGTGGAATTCCTTCCTTGTCC 65618 Query 34886 TTTATTTTTTGTTTGACG-----GATGCTATCGATTCATTGGCCTCGACATCAACGGTTA 34940 | || || || |||||| ||||| || | ||| ||||||||| | || | Sbjct 65617 TGGATCTTCTGCTTGACGTTGTCAATGCTGTC----CGATGG-CTCGACATCGAGCGTGA 65563 Query 34941 TGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||||| ||||| || ||||| |||||||||||||| Sbjct 65562 TGGTCTTGCCCGTCAGAGTCTTCACAAAGATCTGCAT 65526 >seq52 Length=165522 Score = 127 bits (140), Expect = 1e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 34748 TTTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCC 34807 ||||| || | ||| | || |||| ||| | || ||||||||| ||||| |||||| Sbjct 29026 TTTCCACCACGCAAGCGGAGCACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAGTCC 28967 Query 34808 GATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGC 34867 || ||| |||| | || || || ||||| || || ||||||| ||| ||||| ||| | Sbjct 28966 GAGAGGGTGCGACCGTCCTCGAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGATCTGGA 28907 Query 34868 GGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCG 34927 || | ||||||||||| | || || || || ||| | ||||| || | |||| Sbjct 28906 GGAATACCCTCCTTGTCCTGGATCTTCTGCTTCACGTTGTCAATCGAGTCCGAAGGCTCG 28847 Query 34928 ACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || |||| || || ||||| ||||| | ||||| || ||||||||||| Sbjct 28846 ACGTCAAGCGTGATCGTCTTACCCGTCAACGTCTTCACGAAGATCTGCAT 28797 Score = 122 bits (134), Expect = 6e-23 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||| ||||| |||||||| ||| | || | || || || ||||| || || || Sbjct 10636 CTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGGCCGTCCTCGAGCTGCTTACCAGCAAA 10695 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||||| ||| ||||| ||| | || | || |||||||| | || || || ||||| Sbjct 10696 GATCAATCGCTGCTGATCTGGAGGAATGCCTTCCTTGTCCTGGATCTTCTGCTTGACATT 10755 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | ||||| || | |||||| || | || |||||||| |||||||| ||||| || Sbjct 10756 GTCAATCGAGTCCGAAGGCTCGACGTCCAACGTAATGGTCTTGCCCGTGAGTGTCTTGAC 10815 Query 34966 AAAGATCTGCAT 34977 ||||||||||| Sbjct 10816 GAAGATCTGCAT 10827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325689926168156