Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F001573145.1_202016-02-25] 724 sequences; 35,934,203 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq52 100 2e-16 >seq52 Length=165522 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 || ||||| || || ||||| || | || ||||| |||||||| | || ||| || Sbjct 10830 AAGATGCAGATCTTCGTCAAGACACTCACGGGCAAGACCATTACGTTGGACGTCGAGCCT 10771 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 || | | | | | || || || ||||| || || |||||| | || ||| Sbjct 10770 TCGGACTCGATTGACAATGTCAAGCAGAAGATCCAGGACAAGGAAGGCATTCCTCCAGAT 10711 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 |||||| || | || | ||| ||||| ||||| ||||||| | || | |||||||| Sbjct 10710 CAGCAGCGATTGATCTTTGCTGGTAAGCAGCTCGAGGACGGCCGTACCCTCTCGGACTAC 10651 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||||| || |||||||||||||||||| ||||| Sbjct 10650 AACATCCAGAAGGAGTCTACGTTGCACTTGGTG 10618 Score = 87.8 bits (96), Expect = 1e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 107670 GATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGAC 107729 ||||||||| || | || | ||| || || ||||| ||||||| || | ||||| Sbjct 28911 GATCAGCAGCGATTGATCTTTGCTGGCAAGCAGCTCGAGGACGGTCGCACCCTCTCGGAC 28970 Query 107730 TACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAA 107785 |||||||| || |||||||||||||||||| ||||| | | ||||| || ||||| Sbjct 28971 TACAACATCCAGAAGGAGTCTACGTTGCACTTGGTGCTCCGCTTGCGTGGTGGAAA 29026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398873280410836