Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F001573145.1_202016-02-25] 724 sequences; 35,934,203 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq598 226 3e-54 seq176 161 1e-34 seq56 138 1e-27 seq52 120 3e-22 seq655 93.3 4e-14 >seq598 Length=3624 Score = 226 bits (250), Expect = 3e-54 Identities = 634/954 (66%), Gaps = 27/954 (3%) Strand=Plus/Minus Query 148821 GCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCG 148880 || || || || || ||||| || ||| |||||||| | ||||||| | | ||| Sbjct 3458 GCAATCGACGCGAGGTTGCATACAGCCACCTCATCCGAATCTGTGTACTCGATCACCTCA 3399 Query 148881 GCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCAC 148940 ||||| ||||| | |||| || | ||||| || || ||||| |||| | Sbjct 3398 CAGCACAAGTTGCTCGAGCGGATCGTACCGAGGTTCTGCTGGTTCGACTTGCGGTTGGCC 3339 Query 148941 GCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATGAACCGA 149000 ||||||||||||| |||||| || || || || | ||||| || | || | ||| Sbjct 3338 GCGTCCTTGTACAACATGTAAGGCGTACCCGTCTCGATCTGCGACTCGAGAAT--AGCGA 3281 Query 149001 TGCAGGTCCTGCGCGCGCACTTGCTGCTCGTAGCGACCCT---CCT--GCT-CGTATAAA 149054 ||| | ||| | |||| | || || | |||| ||| ||| ||| |||| Sbjct 3280 ACCAGAGC-TGCT-GAGCACG-GATGGTCTT-GCGAGCCTTTCCCTCAGCTTCGTACTTG 3225 Query 149055 GTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGG 149114 | |||| | ||||||| | || || |||| || ||| || ||| || || |||| Sbjct 3224 GCGTACAACGTCTCGAACTCTTCACCCCAGCAGCTGTAGAGGCCAGGGGCCTCGTTCGGG 3165 Query 149115 CACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAG 149174 || | | ||| |||||| || | ||| |||||||| |||| ||| || | ||| Sbjct 3164 CAGAACAAACTCCAGTCGCCGTTCGATTCCACACGCTTCATGAACAAATCTGGGATCCAC 3105 Query 149175 AGCGCGTACATGAGGTCGCGCGCCT--TGCAG-TCTTCGGCGCCCATGTTGCGGCG-CAG 149230 | |||||| | | || || || || || || | || || | | | || Sbjct 3104 AACGCGTAGAATAAATCACGAGCACGGTGGAGCTCATTACCG----TGGTTCTTCTTCAA 3049 Query 149231 GTTGA-GCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCT 149289 || | | || | ||| |||||||||||||| ||||| | ||| | |||| || |||| Sbjct 3048 GTCCAAGAACTC-GAAGATGTCCGCGTGCCATGGCTCCAAGTAGATGGCGAACGAACCCT 2990 Query 149290 TGCGCTTGCC---GCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAG 149346 |||||||||| ||||||||| |||| ||| || ||| ||| ||||| || | ||| | Sbjct 2989 TGCGCTTGCCTCCGCCCTGGTCAACGTAGCGAGCCGTGTCGTTGAACACACGCAACATTG 2930 Query 149347 GTTCAATGCCACTGGCAGTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGCTCGCACTT 149406 | | | ||| | | | ||||| ||| || |||| |||| || || | | Sbjct 2929 GAACGAGACCATTCGACGATCCGTTCGTACCGCGAATGTAACTGTTAGTGGCACGGATGT 2870 Query 149407 TGTGCACGTTGACGCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCG 149466 |||||| | |||| ||||| || ||| | |||| |||||| ||||||| ||||| Sbjct 2869 TGTGCATGCTGACACCGATACCACCGGCCCACTTGGAGATGCAAGCGCAGTTCTTGAGCG 2810 Query 149467 TCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTT 149526 | ||||| ||||||||| ||| |||||| | |||| |||||||| | | | Sbjct 2809 TGTCATAGATACCCTCGATGGAGTCATCCTTCATAGCAAGCAAGAAGCACGACGATAGCT 2750 Query 149527 GCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGGC 149586 | ||| | |||| || || ||||| ||| || | ||||| || || | |||||| Sbjct 2749 GAGGACGAGGCGTACCAGCGTTGAACAAGGTTGGCGTCGCGTGCGTGAAGAAGTTCTGGG 2690 Query 149587 TCATCATCTCGTACGACTCGAGC-ACGCGGTCCATGTCATCGCCATGGATGCCTATGGCG 149645 ||| ||||| | ||||||| ||| | | ||||| || ||||| || ||| Sbjct 2689 ACATGTATTCGTAGGTCTCGAGCGCCGCCG-CAATGTCTTCCTTGTGGATACCAATGCTC 2631 Query 149646 ACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGTAG 149705 || |||| | ||| ||||| || |||||| ||| ||| ||||| |||||||| Sbjct 2630 ACACGCAAAATCATCTGCTGTGGACGCTCCATCACCTTGCCACCAATGCGCAGCAAGTAC 2571 Query 149706 CCGTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCCGTGG 149759 || || || |||||| |||||||||| | ||| || ||||| ||| ||||| Sbjct 2570 GACTTCTCAAGCGTCTTGAAGCCAAAGTAGTCGTACTCGAAGTCACGGTCGTGG 2517 >seq176 Length=73234 Score = 161 bits (178), Expect = 1e-34 Identities = 664/1022 (65%), Gaps = 44/1022 (4%) Strand=Plus/Minus Query 148782 TCAAAATCGTACTTG------TCATCTACGATGCATCGGTTCACGGCGATAGAGGCTAGA 148835 || ||||| |||||| ||| | |||| | ||||| | |||||| || || || Sbjct 73110 TCGAAATCATACTTGCCGTCCTCACCCACGAA-CTTCGGT--AGGGCGATCGACGCAAGG 73054 Query 148836 TTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCTG 148895 |||||||| || |||||||| | ||||||| | | ||| ||||| ||||| Sbjct 73053 TTGCACACAGCGACCTCATCCGAATCTGTGTACTCGATCACCTCACAGCACAAGTTGCTC 72994 Query 148896 CATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGC 148955 | |||| || | ||||| || || ||||| || ||| |||||||||||| Sbjct 72993 GAGCGGATCGTACCGAGGTTCTGCTGGTTCGACTTGCGATTCGCCGCATCCTTGTACAGC 72934 Query 148956 ATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATGAACCGATGCAGGTCCTGCGCG 149015 || ||||| || || || | ||| | || | ||| ||| ||| | ||| | Sbjct 72933 ATATACGGCGTACCCGTCTCGATCTGTGACTCGAGGATGG--CGAACCAGAGC-TGCT-G 72878 Query 149016 CGCACTTGCTGCTCGTAGCGACCCT---CCT--GCT-CGTATAAAGTATACAGCCGCTCG 149069 |||| | || || | |||| ||| ||| ||| | || | |||| | |||| Sbjct 72877 AGCACG-GATGGTCTT-GCGAGCCTTTCCCTCAGCTTCATACTTGGCGTACAACGTCTCG 72820 Query 149070 AACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGACCAC 149129 ||| ||||||| |||| |||| |||||| | | || ||||| | | ||| Sbjct 72819 AACTCCTCGCCCCAGCACTCGTAGAGACCTTGAGCTTCGTTTGGGCAGAACAAACTCCAT 72760 Query 149130 ACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACATGAGG 149189 | |||| ||| | ||| |||||||| |||| ||| || | ||| | | |||| | |||| Sbjct 72759 TCACCGTTCGCCTCCACACGCTTCATGAACAAATCTGGGATCCACAACCCGTAAAAGAGG 72700 Query 149190 TCGCGCGCCT--TGCAG-TCTTCGGCGCCCATGTTGCGGCG-CAGGTTGA-GCACGCTGA 149244 || || || || || || | || || | | | || || | | || | || Sbjct 72699 TCACGAGCACGATGGAGCTCATTACCG----TGGTTCTTCTTCAAGTCCAAGAACTC-GA 72645 Query 149245 ATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGCTTGCC---GC 149301 | |||||||||||||| ||||| | ||| | |||| || |||||||||||||| || Sbjct 72644 AGATGTCCGCGTGCCATGGCTCCAAGTAGATGGCGAACGAACCCTTGCGCTTGCCTCCGC 72585 Query 149302 CCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCACTGG 149361 ||||||| |||| ||| || ||| ||| ||||| || | ||| || | | ||| | | Sbjct 72584 CCTGGTCAACGTAGCGAGCCGTGTCGTTGAACACACGCAACATTGGAACGAGACCATTCG 72525 Query 149362 CAGTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCACGTTGACGC 149421 | ||||| ||| || |||| |||| || || | ||||||| ||| | Sbjct 72524 ACGATCCGTTCGTACCGCGAATGTAACTGTTAGTGGCACGGATGTTGTGCATACTGATAC 72465 Query 149422 CGATGCCGCCGCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTCGAGTAGATGCCCT 149481 ||||||| ||| | |||| ||||| | ||||||| |||||| |||||| |||| Sbjct 72464 CGATGCCACCGGCCCACTTGGAGATAGATGCGCAGTTCTTGAGCGTGTCGTAGATACCCT 72405 Query 149482 CGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGCGTGC 149541 | ||| ||| |||||||| |||| || ||||| ||| || || |||| | Sbjct 72404 CAATGGAGTCATCCTTCATGGCAAGCAAGAAACACGACGACAACTGAGGGCGTGGCGTAC 72345 Query 149542 CGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGGCTCATCATCTCGTACG 149601 | | ||| | || || | |||| || || | ||| ||| |||||| Sbjct 72344 CCGAGTTGAAAAGAGTTGGTGAGCCGTGAGTGAAGAAGCCTTGGGACATGTAGTCGTACA 72285 Query 149602 ACT--CGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCAGCAT 149659 || |||||| ||| | || || || |||||||| || ||||| | | ||| Sbjct 72284 TCTGAAGAGCAC-CGG-CGATATCTTCTTTGTGGATGCCGATACACACGCGTAAGATCAT 72227 Query 149660 ATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAG-TAGCCGTT--TTCTAG 149716 ||||| || |||||| ||| ||| ||| | || | ||| | || | ||| || Sbjct 72226 CTGCTGTGGACGCTCCATCACCTTG---CCATTAATGCGGAAGAGATACGATCGTTCCAG 72170 Query 149717 TGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCAATGGCGGCGTCGAT 149776 |||||| |||||||||| | ||| ||||| ||||| | ||| ||||| | || || Sbjct 72169 CGTCTTGAAGCCAAAGTAGTCGTACTCAAAATCGCGCTCATGGATGATGGCCGAGTTGAA 72110 Query 149777 CA 149778 || Sbjct 72109 CA 72108 >seq56 Length=164687 Score = 138 bits (152), Expect = 1e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | ||| ||||| ||||| || ||||| || | |||| |||||||||| Sbjct 65731 AAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGC 65672 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 |||||||| ||| | || || ||||||||||| || || || ||||||||||| |||| Sbjct 65671 TGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGTGGAATTCCTTCCTTGTCCTGGATC 65612 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||||||| | |||| |||| | ||||| || |||| |||| ||| ||||| Sbjct 65611 TTCTGCTTGACGTTGTCAATGCTGTCCGATGGCTCGACATCGAGCGTGATGGTCTTGCCC 65552 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 |||||||| || || || |||||||| Sbjct 65551 GTCAGAGTCTTCACAAAGATCTGCAT 65526 >seq52 Length=165522 Score = 120 bits (132), Expect = 3e-22 Identities = 147/199 (74%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGC 133521 || ||||| ||||| || ||||| || | | | | ||| ||||||||||||||| | Sbjct 10631 GTAGACTCCTTCTGGATGTTGTAGTC--CGAGAGGGTACGGCCGTCCTCGAGCTGCTTAC 10688 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || | |||||||| || ||||| |||||||||||||| |||||| |||| Sbjct 10689 CAGCAAAGATCAATCGCTGCTGATCTGGAGGAATGCCTTCCTTGTCCTGGATCTTCTGCT 10748 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | |||| || ||| | ||||| ||||| | || | ||| ||||| || || | Sbjct 10749 TGACATTGTCAATCGAGTCCGAAGGCTCGACGTCCAACGTAATGGTCTTGCCCGTGAGTG 10808 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 10809 TCTTGACGAAGATCTGCAT 10827 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| || | ||| ||| |||||||||||||||||| Sbjct 28993 GTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGACC-GTCCTCGAGCTGCTTGCC 28935 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || | |||||||| || ||||| || || |||||||| |||||| ||||| Sbjct 28934 AGCAAAGATCAATCGCTGCTGATCTGGAGGAATACCCTCCTTGTCCTGGATCTTCTGCTT 28875 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | |||| || ||| | ||||| ||||| | |||| || || || |||| || Sbjct 28874 CACGTTGTCAATCGAGTCCGAAGGCTCGACGTCAAGCGTGATCGTCTTACCCGTCAACGT 28815 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 28814 CTTCACGAAGATCTGCAT 28797 >seq655 Length=2523 Score = 93.3 bits (102), Expect = 4e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 147945 GGTTGAGTGCGCAGATAGTACATGCCCGTCTTGAGGCCCATGCGCCATGCGTAGTCGTGC 148004 || || ||||| || |||||||| || ||||| || ||| | |||||| ||| |||| Sbjct 2267 GGCTGCGTGCGGAGGTAGTACATACCTGTCTTCAGTCCCTTCTTCCATGCATAGAAGTGC 2326 Query 148005 ACCGACGACATGAGCGTGTACGTCGGGTGCGGCACAAACAGATTAAACGACTGGCTCTGG 148064 | ||||| || || |||||| | | | | || || | |||||| |||||| Sbjct 2327 ATCGACGTCAACTTACTGATCGTCGGCTCAGCAATATGCACGTTGAGCGACTGACTCTGG 2386 Query 148065 TCAATGAACGCGCCACGGTCAGCGGCCATTTCAATGAGTCGCTTTAT-CTTCATCTCCCA 148123 ||||| || |||||||| |||||||| |||| || || || | ||| |||||||| Sbjct 2387 CAGATGAAAGCACCACGGTCGGCGGCCATGTCAA-GAACAGCCTTCTGCTTGATCTCCCA 2445 Query 148124 GGCCGTCTTGTAC 148136 ||||||||||| Sbjct 2446 CACCGTCTTGTAC 2458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483416425041760