Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F001573145.1_202016-02-25] 724 sequences; 35,934,203 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq297 127 5e-24 seq281 127 5e-24 >seq297 Length=26427 Score = 127 bits (140), Expect = 5e-24 Identities = 311/469 (66%), Gaps = 2/469 (0%) Strand=Plus/Plus Query 121180 GATTCCAACAATAACTTTCTCAATACCCAAAAGAGCAAGAATACGTGCGTGAAAACGTGT 121239 ||| || || || | | ||||||||||||||| || | ||| ||||| ||| || Sbjct 1 GATACCGACGATGATCTGCTCAATACCCAAAAGGAAGAGGAGACGAGCGTGCTGACGGGT 60 Query 121240 TTGACCTTGTGGGATTCCAGCAGAACGATCGCCTTTCGCAATAGCAGATTCAAAACCAtt 121299 ||||| | | || | | ||| | || || || |||| || |||||| Sbjct 61 CTGACCCTCATCAACACCCATCTTAGGGTCGGCCTTGGCGATGGCAGCCTCGAAACCACC 120 Query 121300 tttttCAGCAGGAATAAGAATAAAAGCAGCATCGGCTT-GTCCGACGCCTGAAATCATAT 121358 || || || || | ||| || | | |||| ||||| | |||| || | |||||| | Sbjct 121 CTTCTCGGCTGGCACAAGGATGAGACCAGCGTCGGCGCAGCCCGAA-CCGGTAATCATGT 179 Query 121359 TCTTAATAAAGTCAATATGGCCTGGTGCATCAATAATAGAATAATGATAAGAATCTGTGT 121418 |||| || |||| | || ||||| || || | ||| | || || || || ||| Sbjct 180 TCTTGATGTAGTCCTTGTGACCTGGCGCGTCCACAATGGTGTAGTGGTAGTTGTCGGTGA 239 Query 121419 AAAATTCCTTAGTATTACAATTTACTGTAATTCCGCGCTCACGCTCTTCCTTGTTGTTAT 121478 | || ||||| || ||||| | | || | || |||||||||||||||||| | | Sbjct 240 AGAACTCCTTGGTGTTACACTGGATGGTCACACCACGCTCACGCTCTTCCTTGCACGTGT 299 Query 121479 CCATGTAATAAGCAAATGCAAAACTAGATTTGCCGTTTGCGTCGGCAAGTTCCTGCAACT 121538 ||||||| || ||||| || || || ||||| || || || || |||| | || Sbjct 300 CCATGTAGTAGGCAAAGGCGAACGACGACTTGCCCTTGGCATCAGCCTCGGCCTGGAGCT 359 Query 121539 TCGCCATCTCACGAGCATTTATGCCTCCCAATTTAAAGATAAGATGACCGGTTGTTGTTG 121598 | ||||||||||| || || || || | || ||||| | ||||| || || || | Sbjct 360 TGGCCATCTCACGCTCACCGATACCGCCGAGCTTGAAGATCAAGTGACCAGTGGTGGTCG 419 Query 121599 ACTTTCCCGAGTCAACTTCACCACAGACCACCAAAGATATATGTTGCTT 121647 |||| || | || || | ||| || |||||||| || | || ||||| Sbjct 420 ACTTGCCGGCATCGACGTGACCGCACACCACCAACGACAAGTGCTGCTT 468 >seq281 Length=31605 Score = 127 bits (140), Expect = 5e-24 Identities = 311/469 (66%), Gaps = 2/469 (0%) Strand=Plus/Plus Query 121180 GATTCCAACAATAACTTTCTCAATACCCAAAAGAGCAAGAATACGTGCGTGAAAACGTGT 121239 ||| || || || | | ||||||||||||||| || | ||| ||||| ||| || Sbjct 1 GATACCGACGATGATCTGCTCAATACCCAAAAGGAAGAGGAGACGAGCGTGCTGACGGGT 60 Query 121240 TTGACCTTGTGGGATTCCAGCAGAACGATCGCCTTTCGCAATAGCAGATTCAAAACCAtt 121299 ||||| | | || | | ||| | || ||||| |||| || |||||| Sbjct 61 CTGACCCTCATCAACACCCATCTTAGGGTCGGCCTTGGCAATGGCAGCCTCGAAACCACC 120 Query 121300 tttttCAGCAGGAATAAGAATAAAAGCAGCATCGGCTT-GTCCGACGCCTGAAATCATAT 121358 || || || || | ||| |||| | |||| ||||| | |||| || | |||||| | Sbjct 121 CTTCTCGGCTGGCACAAGGATAAGACCAGCGTCGGCACAGCCCGAA-CCGGTAATCATGT 179 Query 121359 TCTTAATAAAGTCAATATGGCCTGGTGCATCAATAATAGAATAATGATAAGAATCTGTGT 121418 |||| || |||| | || ||||| ||||| | || | || || || || ||| Sbjct 180 TCTTGATGTAGTCCTTGTGACCTGGCGCATCCACGATGGTGTAGTGGTAGTTGTCGGTGA 239 Query 121419 AAAATTCCTTAGTATTACAATTTACTGTAATTCCGCGCTCACGCTCTTCCTTGTTGTTAT 121478 | || ||||| || ||||| | | || | || |||||||||||||||||| | | Sbjct 240 AGAACTCCTTGGTGTTACACTGGATGGTCACACCACGCTCACGCTCTTCCTTGCACGTGT 299 Query 121479 CCATGTAATAAGCAAATGCAAAACTAGATTTGCCGTTTGCGTCGGCAAGTTCCTGCAACT 121538 ||||||| || || || || || || ||||| || || || || |||| | || Sbjct 300 CCATGTAGTACGCGAAGGCGAACGACGACTTGCCCTTGGCATCAGCCTCAGCCTGGAGCT 359 Query 121539 TCGCCATCTCACGAGCATTTATGCCTCCCAATTTAAAGATAAGATGACCGGTTGTTGTTG 121598 | ||||||||||| | || || || | || ||||| || || ||||| || || | Sbjct 360 TGGCCATCTCACGCTCGCCGATACCGCCGAGCTTGAAGATGAGGTGGCCGGTCGTGGTCG 419 Query 121599 ACTTTCCCGAGTCAACTTCACCACAGACCACCAAAGATATATGTTGCTT 121647 |||| || | || || | || ||||| ||||| || | || ||||| Sbjct 420 ACTTACCGGCATCGACGTGGCCGCAGACGACCAACGACAAGTGCTGCTT 468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186801790827764