Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F001573145.1_202016-02-25] 724 sequences; 35,934,203 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq52 125 5e-24 seq56 102 5e-17 >seq52 Length=165522 Score = 125 bits (138), Expect = 5e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | ||| || | |||||| || | || ||| || || |||||||| || ||| Sbjct 29023 CCACCACGCAAGCGGAGCACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAGTCCGAG 28964 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| |||| || | || || || ||||| ||||| |||||||||||| | || Sbjct 28963 AGGGTGCGACCGTCCTCGAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGATCTGGAGGA 28904 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||| || ||||| || ||||| ||| || | ||| | | ||| | || || Sbjct 28903 ATACCCTCCTTGTCCTGGATCTTCTGCTTC-ACGTTGTCAATCGAGTCCGAAGGCTCGAC 28845 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||||| ||||||||| ||||| || ||||| || || ||||||||||| Sbjct 28844 GTCAAGCGTGATCGTCTTACCCGTCAACGTCTTCACGAAGATCTGCAT 28797 Score = 86.0 bits (94), Expect = 4e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 |||||| || | || ||| || || |||||||| || ||||| || || |||| || Sbjct 10618 CACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGGCCGTCCTC 10677 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 | || || || ||||| ||||| |||||||||||| | || | ||||| ||||| Sbjct 10678 GAGCTGCTTACCAGCAAAGATCAATCGCTGCTGATCTGGAGGAATGCCTTCCTTGTCCTG 10737 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 || ||||| || |||| ||| | | ||| | || ||||| | ||| || || | Sbjct 10738 GATCTTCTGCTT-GACATTGTCAATCGAGTCCGAAGGCTCGACGTCCAACGTAATGGTCT 10796 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || | || || || ||||||||||| Sbjct 10797 TGCCCGTGAGTGTCTTGACGAAGATCTGCAT 10827 >seq56 Length=164687 Score = 102 bits (112), Expect = 5e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||| | | ||| | |||||| || | || ||| || || |||||||| || | Sbjct 65754 CACCACCACGAAGACGGAGCACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCCG 65695 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 |||| ||||| |||| || | || || ||||| || |||| ||||||||| ||| | | Sbjct 65694 AGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGTG 65635 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACGG-TGTCGCTTGATTCC 33699 | | ||||| ||||| || ||||| || | | | |||| | |||| || || Sbjct 65634 GAATTCCTTCCTTGTCCTGGATCTTCTGCTTGA-CGTTGTCAATGCTGTCCGATGGCTCG 65576 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | |||||| || || || || | || || |||||||||||||| Sbjct 65575 ACATCGAGCGTGATGGTCTTGCCCGTCAGAGTCTTCACAAAGATCTGCAT 65526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328701099598080