Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F001573145.1_202016-02-25] 724 sequences; 35,934,203 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq715 316 3e-80 seq89 197 2e-44 seq598 161 1e-33 seq176 122 1e-21 seq53 118 2e-20 seq303 114 2e-19 seq37 98.7 1e-14 >seq715 Length=275277 Score = 316 bits (350), Expect = 3e-80 Identities = 437/602 (73%), Gaps = 16/602 (3%) Strand=Plus/Plus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775 ||||| ||||| ||||| ||||| ||||| || || || ||||| |||| | || | Sbjct 110642 GAGCCTCTGCTTCGCGAGAACCCAAACCGATTCGTGCTCTTCCCGATCCAGGAGAAGGAG 110701 Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCT 1455835 || ||||| |||||| || ||||| || ||| ||| ||||| | ||||||| |||| || Sbjct 110702 ATCTGGGATATGTAC-AAGAAGGCGGAAGCCAGCTTCTGGACGGTCGAGGAGATCGATCT 110760 Query 1455836 CGGCGCCGAC---ACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAA 1455892 | |||| | || |||||| ||| |||| | ||||| || |||||||| Sbjct 110761 TGTGCACGACCTCAAGG---ACTGGGGCAACATGACCGACAATGAGCGTCACTTCATCAA 110817 Query 1455893 GCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCC 1455952 |||||| ||||| || || ||| ||||| ||||| || ||| ||||||||| ||| Sbjct 110818 GCACGTGCTCGCGTTCTT-CGCTGCCAGTGATGGTATTGTGAACGAGAACCTTGCCATGA 110876 Query 1455953 GCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCA 1456012 ||| | || || ||||| |||| || || || | || ||||| |||||||| |||| Sbjct 110877 ACTTCAGCAACGAAGTCCAGGTGCCTGAAGCCCGCTGCTTCTACGGCTTCCAGATTGCCA 110936 Query 1456013 TCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGG 1456072 | || ||||||||||| |||| |||||||| |||| ||||| ||| ||||||| | | Sbjct 110937 TTGAGAACATCCACTCGGAAATGTACTCGCTGTTGATTGACACGTACATCAAGGATGCCG 110996 Query 1456073 TCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCG 1456132 ||||||| ||||| | || |||||||| || || | || | ||| ||| |||||| Sbjct 110997 CCGAGAAGAACCACTTGTTCCGCGCCATTGAGACAATCCCATGCGTGCAGAAGAAGGCCA 111056 Query 1456133 ACTGGGCGATGAAGTGG-ATCA-ACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTC 1456190 |||||||| | ||| | | || || ||| || ||||| ||||| ||||| Sbjct 111057 ACTGGGCGCTCCGCTGGTGTGACTCAGAGAACGCCGCG----TTTGCTGAGCGTGTCGTC 111112 Query 1456191 GGCTTTGCCG-CGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTC 1456249 | ||| || | | | ||||| ||||| |||||||| |||||| | |||| |||||| Sbjct 111113 GCCTTCGCTGCCATTGAGGGTATCTTCTTCTCGGGTTCGTTCTGCTCGGTCTTCTGGCTC 111172 Query 1456250 AAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGA 1456309 |||||||| || |||||||| || | || |||| ||||| |||||||||| ||||| Sbjct 111173 AAGAAGCGTGGTCTCATGCCTGG-CCTCAGCTTCTCGAACGAGCTTATCAGTCGTGACGA 111231 Query 1456310 AG 1456311 || Sbjct 111232 AG 111233 Score = 159 bits (176), Expect = 5e-33 Identities = 238/332 (72%), Gaps = 12/332 (4%) Strand=Plus/Plus Query 1456447 AGGTTTGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGTCGAC 1456506 |||| | ||||||||||| ||||| ||||||||| | ||| |||||| |||| | Sbjct 111232 AGGTCTCCACTGTGACTTCGCCTGCTTGCTCTACAACAAGCTTGTCAAC----CGTCTCC 111287 Query 1456507 CGACGTGCCCAAGC----AGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCA 1456562 | || | || | |||| || || |||||| ||||||||| ||||| |||| Sbjct 111288 CAGAGTCGCGAATCCACGAGATTGTCAGTGATGCCGTCACGATCGAGAAGGAGTTCGTCA 111347 Query 1456563 GCGAGTCGCTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATT 1456622 || ||||| || || | ||| ||||| |||||| | | |||||||||||||||||| Sbjct 111348 AGGACTCGCTCCCAGTCGAGCTTATCGGTATGAACTCGGC-GCTCATGTGCCAGTACATC 111406 Query 1456623 GAATTTTGTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGG 1456682 || || ||||| || || || ||| || || || || |||| |||| || Sbjct 111407 GAGTTC-GTCGCTGATCGTCTTCTCCACGCTCTTGG-TGTCTCGAAGATCTACAACGCGT 111464 Query 1456683 CCAACCCGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGC 1456742 | ||||| || |||||||| ||||||||||| |||||||||||||||| |||||| Sbjct 111465 CTAACCCATTTGACTGGATGGATATGATCTCGCTCCAGGGCAAGACCAACTTCTTCGAGA 111524 Query 1456743 GCCGCG-TGGCGAGTACGCCAAGGCCGGCGTC 1456773 || | ||| || ||| ||||||| || ||| Sbjct 111525 AGCGTGTTGGTGAATACTCCAAGGCGGGTGTC 111556 >seq89 Length=119689 Score = 197 bits (218), Expect = 2e-44 Identities = 335/480 (70%), Gaps = 4/480 (1%) Strand=Plus/Plus Query 332856 CGTCAGTGAGGCGCACAAAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCA 332915 |||| |||| ||| ||||||| |||||| || || ||||| | | |||||||| | Sbjct 89559 CGTCCTTGAGTCGCGTGAAGCGCAAGATGGCGCAGCGACTCTGGATCGGCTCGATGATCT 89618 Query 332916 TTGACGACGTGTTGCAGGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGT-C 332974 | | ||| |||| || ||||| || |||||||| || | | ||||| || | Sbjct 89619 TGGTCGAGTTGTTACACGCCAGCGCGAACCGCGTGGTGGACGAGAAGATCTCCATCGTTC 89678 Query 332975 GACCGGAGGGCCTGTTGGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATC 333034 ||| | || ||||| || ||||||| ||| | || ||| || ||||||||||| | |||| Sbjct 89679 GAC-GCAGCGCCTGCTGCGCCGCCGCCGTCATGCTGTCAGCTTCGTCGAGGATCACGATC 89737 Query 333035 TTGTGGCGCCCGTGCGGCAGATCAACCCTTTTCGAGGCGTGGTGTTTGATGATCTTGCGC 333094 |||||||| || | ||||| ||| ||| | ||| ||||| | |||||| Sbjct 89738 TTGTGGCGTCCAGGGGGCAGCGTCACCTTTTGCTGCGCGAACATCTTGATCTTGTTGCGC 89797 Query 333095 ACGACGTCCACGCCGCGCTCGTCCGACGCGTTGAGTTCGAGCACGGCCTCGTCGGCGGCC 333154 || ||| | |||||| ||||| || |||||||| ||||||||||||| | | | Sbjct 89798 ACCGTGTCGATGCCGCGGTCGTCGGAGGCGTTGAGCTCGAGCACGGCCTGCTTCATGCTC 89857 Query 333155 GCACCCAAGAGGACGCGCGCCAGGCACGCGATGCTCGTGGTCTTGCCCGTGCCGGGCGGA 333214 | || | | |||| || || || |||| |||||||||||||||||| ||||| Sbjct 89858 GTGCCGAGCAACTCGCGGGCGAGACAGAGGATGGACGTGGTCTTGCCCGTGCCTGGCGGG 89917 Query 333215 CCCGCCAGCAAGAGGTTGGGCATGTTGCCGTCGGCGGCCAGCGCCTTGAGGTAGGCAACG 333274 |||| | | |||||||| ||||||||||||| |||| ||| || || | | | Sbjct 89918 CCCGAGATGATGAGGTTGGTCATGTTGCCGTCGCGCGCCATGGCCCGCAGCGAGTCGATG 89977 Query 333275 GCGT-GCTCGTTGCCGACAATGTCGTCGAGCACCATTGGGCGGTACTTTTCGATCCATGG 333333 | || ||| |||||| || | ||| ||||| | || |||||||| || | ||| || Sbjct 89978 GTGTCGCT-GTTGCCCACGACATCGGCGAGCGTCTGCGGACGGTACTTCTCCACCCACGG 90036 >seq598 Length=3624 Score = 161 bits (178), Expect = 1e-33 Identities = 224/312 (72%), Gaps = 4/312 (1%) Strand=Plus/Plus Query 259876 GCTCGCCACCTACGAGGCCATGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTT 259935 ||||| |||||||| |||||| ||| | || ||||| |||||||| || | || Sbjct 2667 GCTCGAGACCTACGAATACATGTCCCAGAACTTCTTCACGCACGCGACGCCAACCTTGTT 2726 Query 259936 TAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGA 259995 || || || ||||| || || ||| ||||||||||| || | | ||||||| || Sbjct 2727 CAACGCTGGTACGCCTCGTCCTCAGCTATCGTCGTGCTTCTTGCTTGCTATGAAGGATGA 2786 Query 259996 TTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGG 260055 || |||||||| |||||||||||||||||| | ||||| |||||||||| |||||| Sbjct 2787 CTCCATCGAGGGTATCTATGACACGCTCAAGAACTGCGCTTGCATCTCCAAGTGGGCCGG 2846 Query 260056 CGGCATCGGTTTTGCCGCA--CACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACC 260113 || |||||| | | ||| ||||| | || ||| | | ||| | || || Sbjct 2847 TGGTATCGGTGT--CAGCATGCACAACATCCGTGCCACTAACAGTTACATTCGCGGTACG 2904 Query 260114 AACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTAC 260173 ||||| ||| || || || || || ||| | || || || ||||||||||| |||||| Sbjct 2905 AACGGATCGTCGAATGGTCTCGTTCCAATGTTGCGTGTGTTCAACGACACGGCTCGCTAC 2964 Query 260174 GTCGACCAGTGC 260185 || |||||| || Sbjct 2965 GTTGACCAGGGC 2976 >seq176 Length=73234 Score = 122 bits (134), Expect = 1e-21 Identities = 186/263 (71%), Gaps = 4/263 (2%) Strand=Plus/Plus Query 259925 CCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGAC 259984 || || || || || | || ||||| ||||| ||| |||||||| || || | | | Sbjct 72326 CCAACTCTTTTCAACTCGGGTACGCCACGCCCTCAGTTGTCGTCGTGTTTCTTGCTTGCC 72385 Query 259985 ATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCC 260044 ||||||| || || || ||||| ||||| |||||||||||| | ||||| |||||| Sbjct 72386 ATGAAGGATGACTCCATTGAGGGTATCTACGACACGCTCAAGAACTGCGCATCTATCTCC 72445 Query 260045 AAGGCGGCCGGCGGCATCGGTTTTGCCGCA--CACAAGGTGCGCGCCGCGGGCGCCTACG 260102 ||| |||||| ||||||||| | | | | ||||| | || ||| | | ||| Sbjct 72446 AAGTGGGCCGGTGGCATCGGTAT--CAGTATGCACAACATCCGTGCCACTAACAGTTACA 72503 Query 260103 TGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACA 260162 | || || ||||| ||| || || || || || ||| | || || || ||||||| Sbjct 72504 TTCGCGGTACGAACGGATCGTCGAATGGTCTCGTTCCAATGTTGCGTGTGTTCAACGACA 72563 Query 260163 CGGCGCGCTACGTCGACCAGTGC 260185 |||| |||||||| |||||| || Sbjct 72564 CGGCTCGCTACGTTGACCAGGGC 72586 >seq53 Length=165460 Score = 118 bits (130), Expect = 2e-20 Identities = 177/247 (72%), Gaps = 12/247 (5%) Strand=Plus/Minus Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958 |||||| ||| |||||||||||| | ||||||||||| |||| | ||| Sbjct 110974 TACTCGACCTACATCTACAAGGTGTTGCGTCAGGTGCACCCTGAGACCGGT-----ATC- 110921 Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 ||||| |||||||||||||||||||| |||||||||| |||| ||||| | | Sbjct 110920 TCCAAGCGCGGTATGTCGATCATGAACTCGTTCATCAACGACATTTTCGAGCGCATTGCC 110861 Query 725019 ACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGA--TCGGC-ACGCGCGAG 725075 | |||||||| || |||| | ||||||| || ||| | | | | ||||| Sbjct 110860 TCGGAGGCCGGCAAGCTCTCGCGTTACAACAAG---AAGTCGACCTTGTCGTCCCGCGAA 110804 Query 725076 ATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAG 725135 ||||||||||||||||| || || | | || || |||||| |||||||||||| || Sbjct 110803 ATCCAGACCGCCGTGCGTCTCATGCTCCCTGGTGAGTTGGCCAAGCACGCCGTCTCGGAA 110744 Query 725136 GGCACCA 725142 || |||| Sbjct 110743 GGTACCA 110737 Score = 109 bits (120), Expect = 8e-18 Identities = 175/247 (71%), Gaps = 12/247 (5%) Strand=Plus/Minus Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958 |||||| ||| |||||||||||| | ||||||||||| |||| | ||| Sbjct 3356 TACTCGACCTACATCTACAAGGTGTTGCGTCAGGTGCACCCTGAGACCGGT-----ATC- 3303 Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 ||||| |||||||||||||||||||| |||||||||| |||| ||||| | | Sbjct 3302 TCCAAGCGCGGTATGTCGATCATGAACTCGTTCATCAACGACATTTTCGAGCGCATTGCC 3243 Query 725019 ACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGA--TCGGC-ACGCGCGAG 725075 | |||||||| || |||| | ||||||| || ||| | | | | ||||| Sbjct 3242 TCGGAGGCCGGCAAGCTCTCGCGTTACAACAAG---AAGTCGACCTTGTCGTCCCGCGAA 3186 Query 725076 ATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAG 725135 ||||||||||| ||||| || || | | || || |||||| ||| |||||||| || Sbjct 3185 ATCCAGACCGCTGTGCGTCTCATGCTCCCTGGTGAGTTGGCCAAGCATGCCGTCTCGGAA 3126 Query 725136 GGCACCA 725142 || |||| Sbjct 3125 GGTACCA 3119 >seq303 Length=25634 Score = 114 bits (126), Expect = 2e-19 Identities = 295/443 (67%), Gaps = 10/443 (2%) Strand=Plus/Minus Query 2133426 GGCGAGGATGTGACGCGCGAGGGCCTCCTGGACACACCCATGCGCGTGGCCAAGGCCATG 2133485 ||||||||| ||||||||| || || | |||||| ||| |||||||||| || Sbjct 16427 GGCGAGGATCCAGAGCGCGAGGGTCTGTTGAAGACACCCGAGCGTATGGCCAAGGCGCTG 16368 Query 2133486 GTGGAGCGCACGCGCGGCCAT-CGCATGACCCTGGCCGACGCCGTCGGCGGCGCCCTCTT 2133544 || ||| ||| || |||| || ||||| || | | || || | || Sbjct 16367 CTGTTCAACACCAAGGGCTATGCGCA-GAGCCTGGAGGAGGTGTTGAACGAGGCGGTGTT 16309 Query 2133545 TGACGAGGCGTCGGACGAGATGGTGACGGTGCGCGATATTGACTTTTTCTCCATGTGCGA 2133604 ||| || | ||||| ||||| | |||||||| |||||| | | |||||||||||| Sbjct 16308 TGAAGAAGACCACGACGAAATGGTCATCGTGCGCGACATTGACCTCTACTCCATGTGCGA 16249 Query 2133605 GCACCACCTGCTGCCCTTTATCGGCAAGGCCCACGTGGGCTACCTGCCCGCGGGCAAGAT 2133664 ||| ||| || ||||||| | ||||||| ||| | || ||| | || ||||| | Sbjct 16248 GCATCACATGGTGCCCTTCACGGGCAAGGTGCACATTGGGTACATTCCAAACGGCAAAGT 16189 Query 2133665 CATCGGTCTGAGCAAGATCCCGCGCATCGTCGACATGTTTTCCGACCGCTTCCAAGTACA 2133724 | ||| |||||||| || |||||||| || ||||||| || || |||||||| Sbjct 16188 GCTGGGTTTGAGCAAGCTCGCGCGCATCTCGGAGGTGTTTTCGCGTCGATTGCAAGTACA 16129 Query 2133725 GGAGGCACTCACGCGCCAGATCGC---CGAGAGCGTGAGCCAGGTTA-CGGGCGCGCGCG 2133780 |||| || || ||||| || || || | || || || | | || | | | Sbjct 16128 GGAGCGCCTGACCAAGCAGATTGCGAACGCGATCATGGGC---GTAATCCAGCCCAAG-G 16073 Query 2133781 GCGTCGGCGTCGTCCTCGAGGGCCTGCACATGTGCGTGTGTATGCGCGGCGTGCGCAAAA 2133840 |||| | ||| || |||||| | |||||||||| || ||||| || || || | Sbjct 16072 GCGTGGCCGTGGTGATCGAGGCCACGCACATGTGCATGGTCATGCGTGGTGTCGAGAAGA 16013 Query 2133841 CGGGCTCGAACACGGTCACGCGC 2133863 || ||| ||| |||||| || Sbjct 16012 GCGGTGCGAGCACCGTCACGAGC 15990 >seq37 Length=189610 Score = 98.7 bits (108), Expect = 1e-14 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 17671 GCCATGGACAAGGCGGCTGCTGCGGGCCACCTCGATGTGGTGCGCTTTCTCGACGAGCAC 17730 ||||||||| ||| || | ||| ||||||||||| ||||| | ||| |||| || Sbjct 38726 GCCATGGACGTGGCAGCGTCGATGGGTCACCTCGATGTTGTGCGATACCTCCACGAAAAC 38785 Query 17731 CGTGACGAAGGCTGCACCGAGTTTGCCATGACCAAAGCCGCCATCCACGGTCATCTTGAC 17790 || | ||||||||||| ||| ||||||| | | || || |||| |||||||| ||| Sbjct 38786 CGCCAGGAAGGCTGCACGACGTTCGCCATGAACTACGCAGCAATCCGAGGTCATCTGGAC 38845 Query 17791 GTCGTCGCCTACTTGCACGAGCACCGAACAGAGGCATGCACAGA 17834 || || ||| | || ||| ||||||| || | |||||| || Sbjct 38846 GTGGTGCGCTATCTCCATGAGAACCGAACGGAAGGATGCACGGA 38889 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177741368869288