Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F001573145.1_202016-02-25] 724 sequences; 35,934,203 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq52 161 9e-35 seq56 118 1e-21 >seq52 Length=165522 Score = 161 bits (178), Expect = 9e-35 Identities = 176/231 (76%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 35507 TTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCG 35566 ||||||||||| || | | |||||| || |||||| |||||| || |||||||| || Sbjct 29026 TTTCCACCACGCAAGCGGAGCACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAGTCC 28967 Query 35567 GCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAA 35626 | | ||| || |||| || |||||||| || ||||| ||||| |||||||| || | | Sbjct 28966 GAGAGGGTGCGACCGTCCTCGAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGATCTGGA 28907 Query 35627 GGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTC 35685 |||| | |||||||||| |||||| ||||||| |||| | | || ||| | || Sbjct 28906 GGAATACCCTCCTTGTCCTGGATCTTCTGCTTCA-CGTTGTCAATCGAGTCCGAAGGCTC 28848 Query 35686 CACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || || | ||||||||| ||||||||||| || ||||| || |||||||| Sbjct 28847 GACGTCAAGCGTGATCGTCTTACCCGTCAACGTCTTCACGAAGATCTGCAT 28797 Score = 131 bits (144), Expect = 2e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 35507 TTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCG 35566 ||||| ||||| | | | |||||| || |||||| |||||| || |||||||| || Sbjct 10598 TTTCCGCCACGAAGGCGGAGCACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAGTCC 10657 Query 35567 GCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAA 35626 | | ||| || |||| || ||||||||||| ||||| ||||| |||||||| || | | Sbjct 10658 GAGAGGGTACGGCCGTCCTCGAGCTGCTTACCAGCAAAGATCAATCGCTGCTGATCTGGA 10717 Query 35627 GGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCC 35686 |||| || ||||||||| |||||| ||||| | | | | | || ||| | || Sbjct 10718 GGAATGCCTTCCTTGTCCTGGATCTTCTGCTTGACATTGTCAATCGAGTCCGAAGGCTCG 10777 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || |||| ||| || || || ||||| | || || || || |||||||| Sbjct 10778 ACGTCCAACGTAATGGTCTTGCCCGTGAGTGTCTTGACGAAGATCTGCAT 10827 >seq56 Length=164687 Score = 118 bits (130), Expect = 1e-21 Identities = 167/231 (72%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | |||||| || || || |||||| || |||||||| || | Sbjct 65752 CCACCACGAAGACGGAGCACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCCGAG 65693 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || |||| || |||||||| || || || |||| ||||||||||| | ||| Sbjct 65692 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGTGGA 65633 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCG-TGTCGCTCGAT---TC 35685 | | ||||||||| |||||| ||||| | |||| || | |||| |||| || Sbjct 65632 ATTCCTTCCTTGTCCTGGATCTTCTGCTTGA-CGTTGTCAATGCTGTC---CGATGGCTC 65577 Query 35686 CACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || || | |||||| || || ||||||| ||| |||||||| |||||||| Sbjct 65576 GACATCGAGCGTGATGGTCTTGCCCGTCAGAGTCTTCACAAAGATCTGCAT 65526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450789520317920