Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F001573145.1_202016-02-25] 724 sequences; 35,934,203 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq52 123 3e-23 seq56 105 7e-18 >seq52 Length=165522 Score = 123 bits (136), Expect = 3e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 134504 CACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTC 134563 ||| | ||| | ||| || ||||| || ||||||||||| | |||| || ||| || Sbjct 29006 CACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGACCGTCCTC 28947 Query 134564 GAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTG 134623 |||||| ||||| ||||| ||||| ||||||||||| || || || || || || || || Sbjct 28946 GAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGATCTGGAGGAATACCCTCCTTGTCCTG 28887 Query 134624 AATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTT 134683 || || || || || ||| | | ||| || | || ||||| || || || || || Sbjct 28886 GATCTTCTGCTTCACGTTGTCAATCGAGTCCGAAGGCTCGACGTCAAGCGTGATCGTCTT 28827 Query 134684 ACCGGTTAAAGTTTTAACGAAAATTTGCATTTTGTT 134719 ||| || || || || ||||| || ||||| ||||| Sbjct 28826 ACCCGTCAACGTCTTCACGAAGATCTGCATCTTGTT 28791 Score = 120 bits (132), Expect = 3e-22 Identities = 167/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 134484 TTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCG 134543 ||||| || | || || | ||| | ||| | ||| || ||||| || ||||||||||| Sbjct 10598 TTTCCGCCACGAAGGCGGAGCACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAGTCC 10657 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 | ||| | ||| |||||||| || || ||||| ||||| ||||||||||| || Sbjct 10658 GAGAGGGTACGGCCGTCCTCGAGCTGCTTACCAGCAAAGATCAATCGCTGCTGATCTGGA 10717 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663 || |||||||| || || || || || || ||||| ||| | | ||| || | || Sbjct 10718 GGAATGCCTTCCTTGTCCTGGATCTTCTGCTTGACATTGTCAATCGAGTCCGAAGGCTCG 10777 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 ||||| | |||||||| || || || | || || ||||| || ||||| ||| Sbjct 10778 ACGTCCAACGTAATGGTCTTGCCCGTGAGTGTCTTGACGAAGATCTGCATCTTG 10831 >seq56 Length=164687 Score = 105 bits (116), Expect = 7e-18 Identities = 158/222 (71%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| | ||| | || || ||||| || ||||||||||| | ||| | Sbjct 65743 AGACGGAGCACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGG 65684 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| |||||||| ||||| || || |||| ||||||||| || || || || ||||| Sbjct 65683 CCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGTGGAATTCCTTCC 65624 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATG-TGTCGGACGATTCCACGTCGAGAGT 134674 || || || || || || ||||| || ||||| |||| || | || || ||||| || Sbjct 65623 TTGTCCTGGATCTTCTGCTTGACGTTGT-CAATGCTGTCCGATGGCTCGACATCGAGCGT 65565 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 ||||| || || || | ||| || || || || ||||| || Sbjct 65564 GATGGTCTTGCCCGTCAGAGTCTTCACAAAGATCTGCATCTT 65523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505393826144480