Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F001573145.1_202016-02-25] 724 sequences; 35,934,203 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq598 241 2e-58 seq176 233 2e-56 seq715 156 5e-33 >seq598 Length=3624 Score = 241 bits (266), Expect = 2e-58 Identities = 628/941 (67%), Gaps = 29/941 (3%) Strand=Plus/Minus Query 111225 ACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACT 111284 |||||||||| || || || || | ||||| |||||| ||||||| ||||||||||| Sbjct 3469 ACTTTGGAAGAGCAATCGACGCGAGGTTGCATACAGCCACCTCATCCGAATCTGTGTACT 3410 Query 111285 CTAAAATTTCTGTACATAAGTTGGAACTCTTA---ATCGTCCCCAAATTCTTTTGGTTAC 111341 | | | || || |||||| ||| ||||| || | |||| ||||| Sbjct 3409 CGATCACCTCACAGCACAAGTTG---CTCGAGCGGATCGTACCGAGGTTCTGCTGGTTCG 3353 Query 111342 TCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATT 111401 ||| |||| ||| |||||||| | |||||| ||||| |||||||| |||| || | Sbjct 3352 ACTTGCGGTTGGCCGCGTCCTTGTACAACATGTAAGGCGTACCCGTCTCGATCTGCGACT 3293 Query 111402 TGAGAATAGCCTTCCAAACATCGGCGGCTG-GTACA-ATGGCGTTG---GCCCGTCCCTC 111456 ||||||||| ||| | || |||| | || |||| ||| ||| |||||| Sbjct 3292 CGAGAATAGCGAACCAGA-----GCTGCTGAGCACGGATGGTCTTGCGAGCCTTTCCCTC 3238 Query 111457 CGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGG-AGAGACCTG 111515 || |||||||| | ||| | | || ||||| |||||| | || | | |||| || | Sbjct 3237 AGCTTCGTACTTGGCGTACAACGTCTCGAACTCTTCACCC-CAGCAGCTGTAGAGGCCAG 3179 Query 111516 GTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCC--TCAACCCGCTTCATGAA 111573 | |||| || || ||||| | | ||| | || ||| || || ||||||||||| Sbjct 3178 GGGCCTCGTTCGGGCAGAACAAACTCCAGTCGCCG--TTCGATTCCACACGCTTCATGAA 3121 Query 111574 AAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTA-CACCGAGCCTCTTCGTCACCTT 111632 | ||||| ||||||| | | || | ||| | | ||| | | || | | ||| | Sbjct 3120 CAAATCTGGGATCCACAACGCGTAGAATAAATCACGAGCACGGTGGAGCT-CATTACCGT 3062 Query 111633 GGTTGAGTCGT-AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACT 111691 |||| || | || || | |||||| | ||| ||||||||||||||||| | |||| Sbjct 3061 GGTTCT-TCTTCAAGTCCAAGAACTCGAAGATGTCCGCGTGCCATGGCTCCAAGTAGATG 3003 Query 111692 GCGATAGATCCCTTTCGAC-GCC--CAGCTTGATTTACATAGCGCGCTGTGGCGTTAAAT 111748 |||| || ||||| || ||| | | || | || ||||| || ||| |||| || Sbjct 3002 GCGAACGAACCCTTGCGCTTGCCTCCGCCCTGGTCAACGTAGCGAGCCGTGTCGTTGAAC 2943 Query 111749 ACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTA 111808 || || | |||||||| | ||||| || || || || || ||||| | ||| Sbjct 2942 ACACGCAACATTGGAACGAGACCATTCGACGATCCGTTCGTACCGCGAATGTAACTGTTA 2883 Query 111809 TTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCA 111868 |||| | | | || ||| | || ||||| || |||||||| ||||| || Sbjct 2882 GTGGCACGGATGTTGTGCATGCTGACACCGATACCACCGGCCCACTTGGAGATGCAAGCG 2823 Query 111869 CACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAG 111928 || | | | || || |||||||||| | ||| ||||| ||||| | || | | |||| Sbjct 2822 CAGTTCTTGAGCGTGTCATAGATACCCTCGATGGAGTCATCCTTCATAGCAAGCAAGAAG 2763 Query 111929 CAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATG 111988 || || | ||| || | || |||||||| ||||| | |||||| || ||||| || Sbjct 2762 CACGACGATAGCTGAGGACGAGGCGTACCAGCGTTGAACAAGGTTGGCGTCGCGTGCGTG 2703 Query 111989 AACATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGG 112048 || | |||||||| | ||||| ||||| | | | ||||||||||| |||| Sbjct 2702 AAGAAGTTCTGGGACATGTATTCGTAGGTCTCGAGCGCCGCCGCAATGTCTTCCTTGTGG 2643 Query 112049 ATGCCGATTGCGACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGC 112108 || || || || |||| | ||| | |||||| ||||| | ||||| | | Sbjct 2642 ATACCAATGCTCACACGCAAAATCATCTGCTGTGGACGCTCCATCACCTTGCCACCAATG 2583 Query 112109 CGTTGAAGATAGCTCTTCTCAAGGGTTTTGAGACCAAAGTA 112149 || | | || ||||||||| || |||| |||||||| Sbjct 2582 CGCAGCAAGTACGACTTCTCAAGCGTCTTGAAGCCAAAGTA 2542 >seq176 Length=73234 Score = 233 bits (258), Expect = 2e-56 Identities = 630/944 (67%), Gaps = 35/944 (4%) Strand=Plus/Minus Query 111225 ACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACT 111284 |||| || |||||||| || || | ||||| ||||| ||||||| ||||||||||| Sbjct 73079 ACTTCGGTAGGGCGATCGACGCAAGGTTGCACACAGCGACCTCATCCGAATCTGTGTACT 73020 Query 111285 CTAAAATTTCTGTACATAAGTTGGAACTCTTA---ATCGTCCCCAAATTCTTTTGGTTAC 111341 | | | || || |||||| ||| ||||| || | |||| ||||| Sbjct 73019 CGATCACCTCACAGCACAAGTTG---CTCGAGCGGATCGTACCGAGGTTCTGCTGGTTCG 72963 Query 111342 TCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATT 111401 ||| || |||||||||||| ||||| || ||||| |||||||| ||||||| | Sbjct 72962 ACTTGCGATTCGCCGCATCCTTGTACAGCATATACGGCGTACCCGTCTCGATCTGTGACT 72903 Query 111402 TGAGAATAGCCTTCCAAACATCGGCGGCTG-GTACA-ATGGCGTTG---GCCCGTCCCTC 111456 ||| || || ||| | || |||| | || |||| ||| ||| |||||| Sbjct 72902 CGAGGATGGCGAACCAGA-----GCTGCTGAGCACGGATGGTCTTGCGAGCCTTTCCCTC 72848 Query 111457 CGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCG-TCGGAGAGACCTG 111515 || || ||||| | ||| | | || |||||||| ||| | || ||| |||||||| Sbjct 72847 AGCTTCATACTTGGCGTACAACGTCTCGAACTCCTCGCCC-CAGCACTCGTAGAGACCTT 72789 Query 111516 GTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAA 111575 | || | || ||| ||||| | | ||||| ||| |||| || ||||||||||| | Sbjct 72788 GAGCTTCGTTTGGGCAGAACAAACTCCATTCACCGTTCGCCTCCACACGCTTCATGAACA 72729 Query 111576 GGTCTGGAATCCACAGGGATGAAAAGAGATCTCTA-CACC---GAGCCTCTTCGTCACCT 111631 ||||| ||||||| ||||||| || | | ||| |||| || | ||| Sbjct 72728 AATCTGGGATCCACAACCCGTAAAAGAGGTCACGAGCACGATGGAGC----TCATTACCG 72673 Query 111632 TGGTTGAGTCGT-AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGAC 111690 ||||| || | || || | |||||| | ||| ||||||||||||||||| | |||| Sbjct 72672 TGGTTCT-TCTTCAAGTCCAAGAACTCGAAGATGTCCGCGTGCCATGGCTCCAAGTAGAT 72614 Query 111691 TGCGATAGATCCCTTTCGAC-GCC--CAGCTTGATTTACATAGCGCGCTGTGGCGTTAAA 111747 |||| || ||||| || ||| | | || | || ||||| || ||| |||| || Sbjct 72613 GGCGAACGAACCCTTGCGCTTGCCTCCGCCCTGGTCAACGTAGCGAGCCGTGTCGTTGAA 72554 Query 111748 TACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTT 111807 || || | |||||||| | ||||| || || || || || ||||| | || Sbjct 72553 CACACGCAACATTGGAACGAGACCATTCGACGATCCGTTCGTACCGCGAATGTAACTGTT 72494 Query 111808 ATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGC 111867 | |||| | | | || || || || || || || |||||||| ||||| || Sbjct 72493 AGTGGCACGGATGTTGTGCATACTGATACCGATGCCACCGGCCCACTTGGAGATAGATGC 72434 Query 111868 ACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAA 111927 || | | | || || | |||||||| | || ||||| ||||| |||| | | ||| Sbjct 72433 GCAGTTCTTGAGCGTGTCGTAGATACCCTCAATGGAGTCATCCTTCATGGCAAGCAAGAA 72374 Query 111928 GCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAAT 111987 || |||| ||| || | ||| ||||| | ||||| || ||||||| ||||| | Sbjct 72373 ACACGACGACAACTGAGGGCGTGGCGTACCCGAGTTGAAAAGAGTTGGTGAGCCGTGAGT 72314 Query 111988 GAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGA-CAGAATCAATGTCTTCCCCGT 112046 ||| | ||||||||||| | |||||| ||| |||| || | || ||||| || Sbjct 72313 GAAGAAGCCTTGGGACATGTAGTCGTACATCTG-AAGAGCACCGGCGATATCTTCTTTGT 72255 Query 112047 GGATGCCGATTGCGACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGA 112106 |||||||||| || || | || ||| | |||||| ||||| | |||||| | Sbjct 72254 GGATGCCGATACACACGCGTAAGATCATCTGCTGTGGACGCTCCATCACCTTGCCATTAA 72195 Query 112107 GCCGTTGAAGATA-GCTCTTCTCAAGGGTTTTGAGACCAAAGTA 112149 || ||||| | || | || || || |||| |||||||| Sbjct 72194 TGCGGAAGAGATACGATCGT-TCCAGCGTCTTGAAGCCAAAGTA 72152 >seq715 Length=275277 Score = 156 bits (172), Expect = 5e-33 Identities = 384/578 (66%), Gaps = 12/578 (2%) Strand=Plus/Minus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || || || || |||||||| |||||||||||||| || | || || | ||||| Sbjct 111540 TATTCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGCGAGATCATATCCATC 111481 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCACCCCAACTTGTTTGAGGAGACGA 122490 |||||||||| || |||||| | || | || |||| | ||| |||||| Sbjct 111480 CAGTCAAATGGGTTAGACGCGTTGTAGATCTTCGAGACACCAAGAGCGTGGAGAAGACGA 111421 Query 122491 TCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTACAT 122550 || | || |||| ||||||| | |||| | | |||||||||||||| || | | Sbjct 111420 TCAGCGACGAACTCGATGTACTGGCACATGAGCGCCGAGTTCATACCGATAAGCTCGACT 111361 Query 122551 GGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTGG 122610 ||||| | |||| || |||| | ||||| ||| || || || | || || ||||| Sbjct 111360 GGGAGCGAGTCCTTGACGAACTCCTTCTCGATCGTGACGGCATCACTGACAATCTCGTGG 111301 Query 122611 ATA---GTTTC-GGTAGTGGGTCTATTACGCAAAG--TCTTGAAGAGCTCCACGGCAAAC 122664 || | || || || ||| | || ||| | ||| ||||| ||| || Sbjct 111300 ATTCGCGACTCTGGGAGACGGT---TGAC---AAGCTTGTTGTAGAGCAAGCAGGCGAAG 111247 Query 122665 TCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATG 122724 || ||||||||| || || || ||||| || || ||||||| || || |||||| Sbjct 111246 TCACAGTGGAGACCTTCGTCACGACTGATAAGCTCGTTCGAGAAGCTGAGGCCAGGCATG 111187 Query 122725 AGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCC 122784 ||||| |||||||| | ||| | | | |||||| || || ||||||||||||||||| Sbjct 111186 AGACCACGCTTCTTGAGCCAGAAGACCGAGCAGAACGAACCCGAGAAGAAGATACCCTCA 111127 Query 122785 ACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTC 122844 | || || || | | || || || || | | || || ||| |||| Sbjct 111126 ATGGCAGCGAAGGCGACGACACGCTCAGCAAACGCGGCGTTCTCTGAGTCACACCAGCGG 111067 Query 122845 ATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTGC 122904 | ||||| || |||||||||| | ||||| | || | ||||| || || || Sbjct 111066 AGCGCCCAGTTGGCCTTCTTCTGCACGCATGGGATTGTCTCAATGGCGCGGAACAAGTGG 111007 Query 122905 TTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAA 122942 ||||| || | ||||||| ||||| |||||||||| Sbjct 111006 TTCTTCTCGGCGGCATCCTTGATGTACGTGTCAATCAA 110969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628026316310400