Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F001573145.1_202016-02-25] 724 sequences; 35,934,203 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq598 289 4e-73 seq176 266 4e-66 seq715 185 1e-41 seq141 91.5 2e-13 >seq598 Length=3624 Score = 289 bits (320), Expect = 4e-73 Identities = 644/956 (67%), Gaps = 23/956 (2%) Strand=Plus/Minus Query 118699 ACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACT 118758 |||| ||||| || || ||||| || || || |||| ||||||| ||| ||||||| Sbjct 3469 ACTTTGGAAGAGCAATCGACGCGAGGTTGCATACAGCCACCTCATCCGAATCTGTGTACT 3410 Query 118759 CTATAATTTCCGTGCACAAGTTTGAACTCTTA---ATGGTGCCCAAGTTCTTTTGATTTG 118815 | || | || ||||||||| ||| || || || | ||||| || || | Sbjct 3409 CGATCACCTCACAGCACAAGTTG---CTCGAGCGGATCGTACCGAGGTTCTGCTGGTTCG 3353 Query 118816 ACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACT 118875 |||| ||| ||| |||||||| | |||||| ||||| |||||||| | || |||| Sbjct 3352 ACTTGCGGTTGGCCGCGTCCTTGTACAACATGTAAGGCGTACCCGTCTCGATCTGCGACT 3293 Query 118876 TGAGAATAGCCTTCCAGACATCGGCAGCTG-GCACAG-TGGCGTTG---GCTCGCCCCTC 118930 ||||||||| ||||| || |||| |||| | ||| ||| || ||||| Sbjct 3292 CGAGAATAGCGAACCAGA-----GCTGCTGAGCACGGATGGTCTTGCGAGCCTTTCCCTC 3238 Query 118931 TTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTG-AGAGCCCTG 118989 | |||||||| | ||| | | || |||||||||||| | || ||| |||| || | Sbjct 3237 AGCTTCGTACTTGGCGTACAACGTCTCGAACTCTTCACCC-CAGCAGCTGTAGAGGCCAG 3179 Query 118990 GTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGA 119049 | |||| | |||||||| | | ||| | || | || || ||||||||||| | Sbjct 3178 GGGCCTCGTTCGGGCAGAACAAACTCCAGTCGCCGTTCGATTCCACACGCTTCATGAACA 3119 Query 119050 GGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGA-CAGCGAGCTTCTTCATCCCCCTGA 119108 ||||||||||| | ||| |||| | ||| ||| || | | || ||| || || Sbjct 3118 AATCTGGGATCCACAACGCGTAGAATAAATCACGAGCACGGTGGAGCT-CATTACCGTGG 3060 Query 119109 TTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCG 119168 || ||| ||||| || || | ||| ||||||||||| || |||| ||| | ||| Sbjct 3059 TTCTTCTTCAAGTCCAAGAACTCGAAGATGTCCGCGTGCCATGGCTCCAAGTAGATGGCG 3000 Query 119169 ATTGACCCCTTACGA---CGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACA 119225 | || ||||| || | || |||||| || || | || ||| |||| || ||| Sbjct 2999 AACGAACCCTTGCGCTTGCCTCCGCCCTGGTCAACGTAGCGAGCCGTGTCGTTGAACACA 2940 Query 119226 CGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTG 119285 || | |||||||| || ||||| || || || || || ||||| | ||| || Sbjct 2939 CGCAACATTGGAACGAGACCATTCGACGATCCGTTCGTACCGCGAATGTAACTGTTAGTG 2880 Query 119286 GCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCAC 119345 || | || | ||| ||| | ||| ||||| || |||||||| ||||| ||||| Sbjct 2879 GCACGGATGTTGTGCATGCTGACACCGATACCACCGGCCCACTTGGAGATGCAAGCGCAG 2820 Query 119346 TCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAG 119405 | | |||| || | ||||| || ||||| |||||| |||| | || | | |||||| Sbjct 2819 TTCTTGAGCGTGTCATAGATACCCTCGATGGAGTCATCCTTCATAGCAAGCAAGAAGCAC 2760 Query 119406 CTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAAC 119465 ||| | ||||| | || |||||||||||||| | ||||| |||||||| |||| Sbjct 2759 GACGATAGCTGAGGACGAGGCGTACCAGCGTTGAACAAGGTTGGCGTCGCGTGCGTGAAG 2700 Query 119466 ATACCTTGGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATA 119525 | |||||||| | ||||||||||| | | || | |||||||||| ||| ||| Sbjct 2699 AAGTTCTGGGACATGTATTCGTAGGTCTCGAGCGCCGCCGCAATGTCTTCCTTGTGGATA 2640 Query 119526 CCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTC 119585 || || || |||| || ||| | || || ||||||| | ||| | | | | Sbjct 2639 CCAATGCTCACACGCAAAATCATCTGCTGTGGACGCTCCATCACCTTGCCACCAATGCGC 2580 Query 119586 TGGAGGTAACTCTTCTCCAAGGTCTTGAGACCAAAATAGCCAAAATCGTAGTCCCG 119641 | | ||| |||||| | ||||||| ||||| ||| | | ||| |||| || Sbjct 2579 AGCAAGTACGACTTCTCAAGCGTCTTGAAGCCAAAGTAGTCGTACTCGAAGTCACG 2524 >seq176 Length=73234 Score = 266 bits (294), Expect = 4e-66 Identities = 570/844 (68%), Gaps = 21/844 (2%) Strand=Plus/Minus Query 118699 ACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACT 118758 |||| || |||||||| ||||| || || ||||||| | ||||||| ||| ||||||| Sbjct 73079 ACTTCGGTAGGGCGATCGACGCAAGGTTGCACACAGCGACCTCATCCGAATCTGTGTACT 73020 Query 118759 CTATAATTTCCGTGCACAAGTTTGAACTCTTA---ATGGTGCCCAAGTTCTTTTGATTTG 118815 | || | || ||||||||| ||| || || || | ||||| || || | Sbjct 73019 CGATCACCTCACAGCACAAGTTG---CTCGAGCGGATCGTACCGAGGTTCTGCTGGTTCG 72963 Query 118816 ACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACT 118875 |||| || |||||||||||| ||||| || ||||| |||||||| | || |||| Sbjct 72962 ACTTGCGATTCGCCGCATCCTTGTACAGCATATACGGCGTACCCGTCTCGATCTGTGACT 72903 Query 118876 TGAGAATAGCCTTCCAGACATCGGCAGCTG-GCACAG-TGGCGTTG---GCTCGCCCCTC 118930 ||| || || ||||| || |||| |||| | ||| ||| || ||||| Sbjct 72902 CGAGGATGGCGAACCAGA-----GCTGCTGAGCACGGATGGTCTTGCGAGCCTTTCCCTC 72848 Query 118931 TTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGG 118990 | || ||||| | ||| | | || ||||| || ||| | ||| |||| ||| | Sbjct 72847 AGCTTCATACTTGGCGTACAACGTCTCGAACTCCTCGCCCCAGCACTCGTAGAGACCTTG 72788 Query 118991 TGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAG 119050 || | | ||||||||| | | ||||| ||| | |||| || ||||||||||| | Sbjct 72787 AGCTTCGTTTGGGCAGAACAAACTCCATTCACCGTTCGCCTCCACACGCTTCATGAACAA 72728 Query 119051 GTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATT 119110 ||||||||||| | | | | ||||| || ||| ||| |||| || || || Sbjct 72727 ATCTGGGATCCACAACCCGTAAAAGAGGTCACGAGCACGATGGAGCTCATTACCGTGGTT 72668 Query 119111 GAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGAT 119170 ||| ||||| || || | ||| ||||||||||| || |||| ||| | |||| Sbjct 72667 CTTCTTCAAGTCCAAGAACTCGAAGATGTCCGCGTGCCATGGCTCCAAGTAGATGGCGAA 72608 Query 119171 TGACCCCTTACGA---CGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACG 119227 || ||||| || | || |||||| || || | || ||| |||| || ||||| Sbjct 72607 CGAACCCTTGCGCTTGCCTCCGCCCTGGTCAACGTAGCGAGCCGTGTCGTTGAACACACG 72548 Query 119228 AAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGC 119287 | |||||||| || ||||| || || || || || ||||| | ||| |||| Sbjct 72547 CAACATTGGAACGAGACCATTCGACGATCCGTTCGTACCGCGAATGTAACTGTTAGTGGC 72488 Query 119288 TCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTC 119347 | || | ||| || ||||| || || || |||||||| ||||| ||||| | Sbjct 72487 ACGGATGTTGTGCATACTGATACCGATGCCACCGGCCCACTTGGAGATAGATGCGCAGTT 72428 Query 119348 CGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCT 119407 | |||| || ||||||| || || || |||||| |||| | || | | ||| || Sbjct 72427 CTTGAGCGTGTCGTAGATACCCTCAATGGAGTCATCCTTCATGGCAAGCAAGAAACACGA 72368 Query 119408 CGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACAT 119467 ||||| ||||| | || ||||| | |||||| |||||||||| |||| |||| | Sbjct 72367 CGACAACTGAGGGCGTGGCGTACCCGAGTTGAAAAGAGTTGGTGAGCCGTGAGTGAAGAA 72308 Query 119468 ACCTTGGGACATCTTGTCGTAGGTCTCCAAGA-CGGCGGGAATGTCTTCCCCGTGAATAC 119526 ||||||||||| | |||||| ||| |||| | ||| || ||||| ||| || | Sbjct 72307 GCCTTGGGACATGTAGTCGTACATCT-GAAGAGCACCGGCGATATCTTCTTTGTGGATGC 72249 Query 119527 CGAT 119530 |||| Sbjct 72248 CGAT 72245 >seq715 Length=275277 Score = 185 bits (204), Expect = 1e-41 Identities = 552/845 (65%), Gaps = 14/845 (2%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || ||||| ||||||||||||||||| ||||| || | | ||| | ||||| Sbjct 111540 TATTCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGCGAGATCATATCCATC 111481 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACTCCAATCTGTTTGAGGAGACGA 129847 | ||||||||||| | ||| | || | || |||| | ||| |||||| Sbjct 111480 CAGTCAAATGGGTTAGACGCGTTGTAGATCTTCGAGACACCAAGAGCGTGGAGAAGACGA 111421 Query 129848 TCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACAT 129907 || | |||| |||| ||||||| |||| | | |||||||||||||| || | | Sbjct 111420 TCAGCGACGAACTCGATGTACTGGCACATGAGCGCCGAGTTCATACCGATAAGCTCGACT 111361 Query 129908 GGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTGA 129967 ||||||| |||| || |||| ||||||| || || || || | || || |||| Sbjct 111360 GGGAGCGAGTCCTTGACGAACTCCTTCTCGATCGTGACGGCATCACTGACAATCTCGTGG 111301 Query 129968 ATG---GTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTCC 130024 || | ||| | | | | ||| | | ||| |||| ||| || || Sbjct 111300 ATTCGCGACTCTGGGAGACGG---TTGACAAGCTTGTTGTAGAGCAAGCAGGCGAAGTCA 111244 Query 130025 TGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGA 130084 ||||||||| |||||||| ||| || || |||||||||| || || ||||||||| Sbjct 111243 CAGTGGAGACCTTCGTCACGACTGATAAGCTCGTTCGAGAAGCTGAGGCCAGGCATGAGA 111184 Query 130085 CCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACA 130144 || |||||||| | |||||| | || || || || || ||||||||||| ||||| | Sbjct 111183 CCACGCTTCTTGAGCCAGAAGACCGAGCAGAACGAACCCGAGAAGAAGATACCCTCAATG 111124 Query 130145 CACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATC 130204 ||||| || | || |||||||||||| | | | || || ||| |||| | | Sbjct 111123 GCAGCGAAGGCGACGACACGCTCAGCAAACGCGGCGTTCTCTGAGTCACACCAGCGGAGC 111064 Query 130205 GCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTC 130264 ||||| | ||||| |||| | || |||| |||| || || || | | ||| Sbjct 111063 GCCCAGTTGGCCTTCTTCTGCACGCATGGGATTGTCTCAATGGCGCGGAACAAGTGGTTC 111004 Query 130265 TTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCATGGACC 130324 || || | | ||| ||||||||| | || || | || || |||| |||| Sbjct 111003 TTCTCGGCGGCATCCTTGATGTACGTGTCAATCAACAGCGAGTACATTTCCGAGTGGATG 110944 Query 130325 ATTTCATTATGGCA--CTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCAT 130382 | ||| |||||| ||| | ||||||| |||| ||||| | ||| || || | Sbjct 110943 TTCTCA--ATGGCAATCTGGAAGCCGTAGAAGCAGCGGGCTTCAGGCACCTGGACTTCGT 110886 Query 130383 CTGCAAAATTGTTATTG--ATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGC 130440 ||| || | | || | | ||||| ||||| ||||| |||| || ||||| Sbjct 110885 -TGCTGAAGT-TCATGGCAAGGTTCTCGTTCACAATACCATCACTGGCAGCGAAGAACGC 110828 Query 130441 CAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCAGGGTCTTCCAGTCGTCAAGATC 130500 || | | ||| ||||| | | ||||| ||| ||| | | |||||| | || || Sbjct 110827 GAGCACGTGCTTGATGAAGTGACGCTCATTGTCGGTCATGTTGCCCCAGTCCTTGAGGTC 110768 Query 130501 CTTCGAGAGATCTACCTCCTCCGCAGTCCAATTGCTCATTTGAGCCTTCTTATAGAGTTC 130560 | | ||||| | |||||| | ||||| ||| || |||||||| || | || Sbjct 110767 GTGCACAAGATCGATCTCCTCGACCGTCCAGAAGCTGGCTTCCGCCTTCTTGTACATATC 110708 Query 130561 CCAGA 130565 ||||| Sbjct 110707 CCAGA 110703 >seq141 Length=89168 Score = 91.5 bits (100), Expect = 2e-13 Identities = 254/379 (67%), Gaps = 18/379 (5%) Strand=Plus/Minus Query 178883 AACCCGTGCCGATGCCTTCGGTTCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGA 178942 |||| || || || ||||| | ||||| || ||||||||||| | ||| | ||| Sbjct 24728 AACCAGTACCAATACCTTCACTACCGTTGACAAGAACCATTGGGATGACTGGAACATACC 24669 Query 178943 AGTCTGGTTCAATCGCACGCCCGTCATCATCCAAATAATTGAGCACGGGGTCGTCCCTCG 179002 | || ||||| |||| | || ||||| || | || ||||| || || ||| | Sbjct 24668 ACTCAGGTTCGATCGATTGACCATCATCGTCAAGGTAGTTGAGAACATCGTTATCCAGTG 24609 Query 179003 GATCAAAGATTTTACGAGCATCCCTGGT--GAGTTTTGTGAAGATGTACC--TCGTTTGA 179058 |||| |||| |||||| ||| ||| || ||||||||||| | | ||| Sbjct 24608 GATCGAAGAGGCATCGAGCA--AGAGGTTCGAGGTTGGTGAAGATGTAACGAGGGCTTG- 24552 Query 179059 GACGCATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTG 179118 || || ||||| ||||| | ||||| || || ||||| |||| || | |||| Sbjct 24551 CAC-TGTCCTTGCCTCCCATCAATCGCGTACCGAACTGACCGTTTGGCGAGAGCAAATTG 24493 Query 179119 ATATTGTTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGTATCCGCGAGGGAGACT 179178 || ||||| |||| | |||| | |||| |||||||| ||| ||| | ||| Sbjct 24492 ATGTTGTTGCTGCCCACGAAGTCTTGCGCCATGTTGACAATTGTA-CCG---TATATACT 24437 Query 179179 ----TCACCGTGATGGTAAGCCGACTTGTCCGCCACATATGCCGCCAA-CTGCGCCACCT 179233 |||||||||||||||||||| | |||| || ||| || |||| || || |||| Sbjct 24436 TGCCTCACCGTGATGGTAAGCCGAATGCTCCGAGACGTAT-CCTCCAAGTTGGGCGACCT 24378 Query 179234 TCATCTCATCCTTGAGGTT 179252 | || || ||| ||||| Sbjct 24377 TGATTTCCGTCTTCAGGTT 24359 Score = 84.2 bits (92), Expect = 3e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 180845 TCACGATGGAAAACTCCGAAGAATAGATGTTCGTCAACTTGGCACCGTAGCCATTGCGTC 180904 || ||| || || |||| || |||| || ||||||||||||||||| || || || | Sbjct 22589 TCTCGACGGTGAATTCCGTGGAGAAGATATTGGTCAACTTGGCACCGTAACCGTTTCGAC 22530 Query 180905 CACCAACAATTCTCTTCTTGTTGTCATCGTAGTTTGTACTCGTGAGGAGGTGACCAAAGG 180964 |||| ||| | |||| |||| ||| ||| |||| | | || | ||||||||| ||| Sbjct 22529 CACCGACAGTCTTCTTTTTGTCGTCGTCGAAGTTACTTCCGGTCAAGAGGTGACCGAAGA 22470 Query 180965 TAAGTTCTGGA 180975 | ||||| ||| Sbjct 22469 TGAGTTCCGGA 22459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618429603161440