Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F001573145.1_202016-02-25] 724 sequences; 35,934,203 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq598 208 9e-49 seq176 168 8e-37 seq715 158 1e-33 seq2 86.0 7e-12 >seq598 Length=3624 Score = 208 bits (230), Expect = 9e-49 Identities = 624/949 (66%), Gaps = 33/949 (3%) Strand=Plus/Plus Query 104156 TATTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTCAACGGCTCGATGGTGTCT---TG 104212 || ||||| |||| || ||||||||| || ||| | || | ||||| | || Sbjct 2542 TACTTTGGCTTCAAGACGCTTGAGAAGTCGTA-CTTG--CTGCGCATTGGTGGCAAGGTG 2598 Query 104213 ATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATT 104272 ||||| |||||| | ||| | |||| ||| ||| ||||| || |||||||||| Sbjct 2599 ATGGAGCGTCCACAGCAGATGATTTTGCGTGTGAGCATTGGTATCCACAAGGAAGACATT 2658 Query 104273 GATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCA 104332 | | | | ||||| ||||| | |||||||| | |||| ||||| || ||| Sbjct 2659 GCGGCGGCGCTCGAGACCTACGAATACATGTCCCAGAACTTCTTCACGCACGCGACGCCA 2718 Query 104333 ACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAAC 104392 ||| | ||||| |||||||| || | || || | || |||||| | | || | Sbjct 2719 ACCTTGTTCAACGCTGGTACGCCTCGTCCTCAGCTATCGTCGTGCTTCTTGCTTGCTATG 2778 Query 104393 AAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAG 104452 ||||| ||||| ||| | |||||||||| || || | | | || || ||||| ||| Sbjct 2779 AAGGATGACTCCATCGAGGGTATCTATGACACGCTCAAGAACTGCGCTTGCATCTCCAAG 2838 Query 104453 TGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGG 104512 ||||| || ||||| || | ||| || | | | |||| ||| | ||||| Sbjct 2839 TGGGCCGGTGGTATCGGTGTCAGCATGCACAACATCCGTGCCACTAACAGTTACATTCGC 2898 Query 104513 GGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCG 104572 || || || || || ||||| | |||||||| | || || || |||| ||| || Sbjct 2899 GGTACGAACGGATCGTCGAATGGTCTCGTTCCAATGTTGCGTGTGTTCAACGACACGGCT 2958 Query 104573 CGCTATGTAAATCAAGCTG--GGC-GTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCA 104629 ||||| || | || | | ||| || ||||| || |||| |||| | |||||| Sbjct 2959 CGCTACGTTGACCAGGGCGGAGGCAAGCGCAAGGGTTCGTTCGCCATCTACTTGGAGCCA 3018 Query 104630 TGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCG 104689 ||||||||||| ||| | |||||| | || ||| ||||| ||| | || | | Sbjct 3019 TGGCACGCGGACATCTTCGAGTTCTTGGACTTGAAGAAGAACCACGGTAATGA-GCTCCA 3077 Query 104690 CGGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGA 104748 | |||| || ||| | |||| ||| | ||||| |||||| | ||||||||| | || || Sbjct 3078 CCGTGCTCGTGATTTATTCTACGCGTTGTGGATCCCAGATTTGTTCATGAAGCGTGTGGA 3137 Query 104749 GGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCT-CCGATGCCG 104807 || ||| | ||| | | || || || || |||| ||||| |||| | | ||| | Sbjct 3138 ATCGAACGGCGACTGGAGTTTGTTCTGCCCGAACGAGGCCCCTGGCCTCTACAGCTGCTG 3197 Query 104808 TGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTAC------GAGGAAGAAGGTCGGGCGA 104861 |||||| ||||| || | | ||| | |||||| |||| | | | ||| || Sbjct 3198 -GGGTGAAGAGTTCGAGACGTTGTACGCCAAGTACGAAGCTGAGGGAAAGGCTCGCAAGA 3256 Query 104862 CTGCGACGGTGC-CAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACT 104920 | | | |||| |||| || | ||| ||||||||| |||| || | |||||| Sbjct 3257 C--CATCCGTGCTCAGCAGC-----TCTGGTTCGCTATTCTCGAGTCGCAGATCGAGACG 3309 Query 104921 GGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTG 104980 ||||| || |||||| | ||||| ||||| |||| ||| || || |||| | Sbjct 3310 GGTACGCCTTACATGTTGTACAAGGACGCGGCCAACCGCAAGTCGAACCAGCAGAACCTC 3369 Query 104981 GGTGTGAT---CAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGAT 105037 ||| ||| | ||| ||| | || || | | || | ||||| ||| Sbjct 3370 GGTACGATCCGCTCGAG---CAACTTGTGCTGTGAGGTGATCGAGTACACAGATTCGGAT 3426 Query 105038 GAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGG 105086 ||| |||||| || |||||||| || || ||||| || |||| |||| Sbjct 3427 GAGGTGGCTGTATGCAACCTCGCGTCGATTGCTCTTCCAAAGTTCGTGG 3475 >seq176 Length=73234 Score = 168 bits (186), Expect = 8e-37 Identities = 496/752 (66%), Gaps = 23/752 (3%) Strand=Plus/Plus Query 104211 TGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACA 104270 ||||||| |||||| | ||| || | |||||| ||||| || || ||||| | Sbjct 72207 TGATGGAGCGTCCACAGCAGATGATCTTACGCGTGTGTATCGGCATCCACAAAGAAGATA 72266 Query 104271 TTGATTCTG-TCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACA 104329 | | || |||| ||| |||||| | ||||||||||| | |||| ||||| || Sbjct 72267 TCGCCGGTGCTCTTC-AGATGTACGACTACATGTCCCAAGGCTTCTTCACTCACGGCTCA 72325 Query 104330 CCAACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCC 104389 ||||| || ||||| | ||||| ||| | || || |||| || ||| | | ||| Sbjct 72326 CCAACTCTTTTCAACTCGGGTACGCCACGCCCTCAGTTGTCGTCGTGTTTCTTGCTTGCC 72385 Query 104390 AACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCA 104449 | ||||| ||||| || | |||||||| | || || | | | || || ||||| Sbjct 72386 ATGAAGGATGACTCCATTGAGGGTATCTACGACACGCTCAAGAACTGCGCATCTATCTCC 72445 Query 104450 AAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATT 104509 |||||||| || || || || || || || | | | |||| ||| | ||| Sbjct 72446 AAGTGGGCCGGTGGCATCGGTATCAGTATGCACAACATCCGTGCCACTAACAGTTACATT 72505 Query 104510 CGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACA 104569 || || || || || || ||||| | |||||||| | || || || |||| ||| Sbjct 72506 CGCGGTACGAACGGATCGTCGAATGGTCTCGTTCCAATGTTGCGTGTGTTCAACGACACG 72565 Query 104570 GCGCGCTATGTAAATCAAGCTG--GGC-GTCGAAAGGGATCTATCGCAGTCTATCTTGAG 104626 || ||||| || | || | | ||| || ||||| || |||| |||| | ||| Sbjct 72566 GCTCGCTACGTTGACCAGGGCGGAGGCAAGCGCAAGGGTTCGTTCGCCATCTACTTGGAG 72625 Query 104627 CCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAG 104686 |||||||||||||| ||| | |||||| | || ||| ||||| ||| | || | Sbjct 72626 CCATGGCACGCGGACATCTTCGAGTTCTTGGACTTGAAGAAGAACCACGGTAATGA-GCT 72684 Query 104687 GCGCGGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGT 104745 | |||| || || ||||| | || | ||||| |||||| | ||||||||| | || Sbjct 72685 CCATCGTGCTCGTGACCTCTTTTACGGGTTGTGGATCCCAGATTTGTTCATGAAGCGTGT 72744 Query 104746 TGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA-TG 104804 |||| || || | ||| | | || || ||| || | || | ||||||| ||| || Sbjct 72745 GGAGGCGAACGGTGAATGGAGTTTGTTCTGCCCAAACGAAGCTCAAGGTCTCTACGAGTG 72804 Query 104805 CCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTA------CGAGGAAGAAGGTCGGG 104858 | | ||| |||||||| || | | ||| | ||||| |||| | | | ||| Sbjct 72805 CTG-GGGCGAGGAGTTCGAGACGTTGTACGCCAAGTATGAAGCTGAGGGAAAGGCTCGCA 72863 Query 104859 CGACTGCGACGGTGC-CAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAG 104917 ||| | | |||| |||| || | ||| || || ||| |||| || | |||| Sbjct 72864 AGAC--CATCCGTGCTCAGCAGC-----TCTGGTTCGCCATCCTCGAGTCACAGATCGAG 72916 Query 104918 ACTGGTACACCATACATGCTTTACAAAGACGC 104949 || ||||| || || ||||| ||||| || || Sbjct 72917 ACGGGTACGCCGTATATGCTGTACAAGGATGC 72948 >seq715 Length=275277 Score = 158 bits (174), Expect = 1e-33 Identities = 199/271 (73%), Gaps = 2/271 (1%) Strand=Plus/Plus Query 94675 ATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACA 94734 || |||| ||| || ||||||| || |||||||| || | || ||||| | ||| Sbjct 110972 ATTGACACGTACATCAAGGATGCCGCCGAGAAGAACCACTTGTTCCGCGCCATTGAGACA 111031 Query 94735 GTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGT-CGCG 94793 | || || | || ||||| || | ||||| | |||| ||| || || ||| Sbjct 111032 ATCCCATGCGTGCAGAAGAAGGCCAACTGGGCGCTCCGCTGGTGTGACTCAGAGAACGCC 111091 Query 94794 TTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTC 94853 | ||||||||||| || |||| || || ||||||||||||||||||| ||||| Sbjct 111092 G-CGTTTGCTGAGCGTGTCGTCGCCTTCGCTGCCATTGAGGGTATCTTCTTCTCGGGTTC 111150 Query 94854 CTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAA 94913 |||||| | | | |||||||||||||| ||||||||||| || ||| ||||||| || Sbjct 111151 GTTCTGCTCGGTCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGCCTCAGCTTCTCGAA 111210 Query 94914 CGAGCTTATCTCTCGTGACGAGGGACTCCAC 94944 |||||||||| ||||||||| || |||||| Sbjct 111211 CGAGCTTATCAGTCGTGACGAAGGTCTCCAC 111241 >seq2 Length=488588 Score = 86.0 bits (94), Expect = 7e-12 Identities = 282/427 (66%), Gaps = 16/427 (4%) Strand=Plus/Plus Query 168278 CCCGTACCGATACCCTCTGTACCGTTCACGAGAACCATGGGGAGTGTTGGCATGTAGAAG 168337 || |||||||| ||||||| ||||||| || | |||||| | |||| | |||| || Sbjct 274744 CCAGTACCGATGCCCTCTGAGCCGTTCAACAGCAGCATGGGCAAGATTGGTACGTAGTAG 274803 Query 168338 TCTGGCTCAATGGGGCGACCATCGTCATCCAAATAGTTGAGAATTGGATCATC----TCT 168393 | ||||| | ||| ||||||||| || | ||| | || | | || || ||| Sbjct 274804 TGAGGCTCCACTGGGTAACCATCGTCGTCGACGTAGCTCAGCAACGCGTCGTCGTCTTCT 274863 Query 168394 CGGATCAAAGATCTTTCGGGCAT-CTTTTGTGAGCTTTGTAAAGATATACCTCGTTTGAG 168452 ||| || | | || | | ||| || || || ||||| || | | | Sbjct 274864 GGGAACAG----CATACGCGTGTACTTCTGCAAGAAC-GTGAAGATGTAACGAGGACTCG 274918 Query 168453 ACGCATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTG- 168511 ||||||||||||||| || |||||||| || ||||| | || | || | || | Sbjct 274919 CAGCATCCTTACCACCCTGAAGTCGCGTACCGAATTGACCCGAAGGGTAGAGCA-ATGGC 274977 Query 168512 ATATTGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCG-AGAGAGAC 168570 | ||||| | ||| | |||||| | ||||| || ||||| || | | | || || | Sbjct 274978 AAGTTGTTCGCACCAACGTAGTCCTGCGCCATATTCACAATTGT-TGAGTGAAGTGATGC 275036 Query 168571 TTCACCGTGGTGGTACGCACTCTTCTCTGCGACA-AATGCCGCCAACTGCGCCACTTTCA 168629 ||||||||||||||| || | | ||| | ||| | |||| | ||||||||| || | Sbjct 275037 TTCACCGTGGTGGTATGCCGTATGCTC-ACTACAGTAACCCGCGAGCTGCGCCACCTTGA 275095 Query 168630 TCTCATCCTTGAGATTCTTGTGGAAGCATGCGTACATAACCTTGCGTTGCGAAGGCTTGA 168689 || | | |||| || | || || ||| ||| ||||| || || || ||||| Sbjct 275096 CTTCCTTCGTGAGTTTTCGCTTGAGACAAGCGAACAACACCTTACGCTGTGATACCTTGA 275155 Query 168690 GACCATC 168696 ||||||| Sbjct 275156 GACCATC 275162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583255521489760