Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F001573145.1_202016-02-25] 724 sequences; 35,934,203 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq43 150 1e-31 >seq43 Length=178053 Score = 150 bits (166), Expect = 1e-31 Identities = 387/583 (66%), Gaps = 6/583 (1%) Strand=Plus/Minus Query 29871 TCTTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACT 29930 |||| ||||| || | || || || ||||| ||| || || || | | ||||| || | Sbjct 81274 TCTTGAGCGGCTCGAGGTGATTCAAGTAGATGTGTGCATCACCAATGACATGGACGAAGT 81215 Query 29931 CTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGA 29990 | || | | ||||| | ||| ||||| |||| || | | | ||| ||||||| Sbjct 81214 CACCGGCCTTGAGCCCAGCGACCTGAGCGATCAATCGGGTCAACAACGCGTAACTGGCGA 81155 Query 29991 TGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCT 30050 | ||||| || || ||||| |||||||| |||| | |||||| | || |||||||||| Sbjct 81154 TATTAAACGGCACACCGAGGCCCATGTCAGCCGATCGCTGGTACATTTGGCACGAGAGCT 81095 Query 30051 CTCCGT-CGCTCACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCC 30109 | || | ||| ||||| ||||| || | |||||||||||| || ||||| Sbjct 81094 CGCCATTCGCG-ACGTAGAACTGGCAGAACATGTGGCACGGAGGGAGCGCCATCTCCTTG 81036 Query 30110 AAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATG 30169 | |||| || ||||| || ||| || || |||| ||| | |||||| || | | Sbjct 81035 AGGTCTGCTGGATTCCATGCAGACAAGAGAATACGCCGGTCGTTCGGGTTGGTCTTAAGC 80976 Query 30170 AGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCC 30229 || | | | | ||||||||||| ||| || | ||| || || ||| || Sbjct 80975 TTGTGGATGACCTCAGCGAGCTGATCCACACCCTGACCGGTGTAATCGGCGTGCATATCG 80916 Query 30230 GTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCT 30289 || |||| || || || || | ||||||||| || ||||| || || || || || || Sbjct 80915 GTATACTTGGCACCAAAGTGACGCCACTGGAAGCCATACACTGGACCGAGATCGCCTGCT 80856 Query 30290 TCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATC 30349 || | || ||| || | | | | | || | || || ||| ||||||| || Sbjct 80855 TCGCGATGACCGAGACCGATGCTTCCTAGGTATTCCTTCGATCCATTGCCGTCCCAAATA 80796 Query 30350 TTTACCCCCTTCTC--AGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCA 30407 | | |||| || ||||| || |||| || ||| || |||| |||||||| || Sbjct 80795 TGAATGTCCTTGTCCTGGAGAG-TC-TTGGCATTCGTGTCACCGCTGATGAACCACAACA 80738 Query 30408 GCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAG 30450 |||| || | ||| | ||| || || | ||| |||||||| Sbjct 80737 GCTCTTCTGCAACGCCACGCCAGAACACGCGCTTCGTCGTGAG 80695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406306814818608