Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F001573145.1_202016-02-25] 724 sequences; 35,934,203 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq56 140 3e-28 seq52 125 6e-24 >seq56 Length=164687 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || |||||||| |||||| | || || || || || || || || Sbjct 65526 ATGCAGATCTTTGTGAAGACTCTGACGGGCAAGACCATCACGCTCGATGTCGAGCCATCG 65585 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| ||||| | ||||| || || || || ||||| ||||| || ||||| || || Sbjct 65586 GACAGCATTGACAACGTCAAGCAGAAGATCCAGGACAAGGAAGGAATTCCACCAGACCAG 65645 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||||||||| || | || ||| | || | || || |||||| Sbjct 65646 CAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACTACAAC 65705 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || |||||||||||||| || ||||| | ||| | || ||||| Sbjct 65706 ATCCAGAAGGAGTCGACCTTGCACTTGGTGCTCCGTCTTCGTGGTGG 65752 >seq52 Length=165522 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||| || ||| | || || ||||| || || || || Sbjct 28797 ATGCAGATCTTCGTGAAGACGTTGACGGGTAAGACGATCACGCTTGACGTCGAGCCTTCG 28856 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||||||||||| | || || || || || || ||||| || || || || || ||||| Sbjct 28857 GACTCGATTGACAACGTGAAGCAGAAGATCCAGGACAAGGAGGGTATTCCTCCAGATCAG 28916 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| || || | || ||||| || | || ||| || ||| | || || |||||| Sbjct 28917 CAGCGATTGATCTTTGCTGGCAAGCAGCTCGAGGACGGTCGCACCCTCTCGGACTACAAC 28976 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || |||||||| || || || ||||| | || ||||| ||||| Sbjct 28977 ATCCAGAAGGAGTCTACGTTGCACTTGGTGCTCCGCTTGCGTGGTGG 29023 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || || |||||| | ||||| | || || || || || Sbjct 10827 ATGCAGATCTTCGTCAAGACACTCACGGGCAAGACCATTACGTTGGACGTCGAGCCTTCG 10768 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||||||||||| | ||||| || || || || ||||| |||||||| || || ||||| Sbjct 10767 GACTCGATTGACAATGTCAAGCAGAAGATCCAGGACAAGGAAGGCATTCCTCCAGATCAG 10708 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| || || | || || || || | || ||| | ||| | || || |||||| Sbjct 10707 CAGCGATTGATCTTTGCTGGTAAGCAGCTCGAGGACGGCCGTACCCTCTCGGACTACAAC 10648 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGT 27196 || || |||||||| || || || ||||| Sbjct 10647 ATCCAGAAGGAGTCTACGTTGCACTTGGT 10619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434914463988480