Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F001573145.1_202016-02-25] 724 sequences; 35,934,203 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq43 201 1e-46 >seq43 Length=178053 Score = 201 bits (222), Expect = 1e-46 Identities = 470/704 (67%), Gaps = 4/704 (1%) Strand=Plus/Plus Query 34220 TTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGG 34279 || ||| |||| |||||||| || |||| |||| ||||| | || |||||| ||||| Sbjct 80686 TTCCCGGTGCTCACGACGAAGCGCGTGTTCTGGCGTGGCGTTGCAGAAGAGCTGTTGTGG 80745 Query 34280 TTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGAC 34339 ||| | || || | |||||| ||||| ||| | | || | | || |||||| Sbjct 80746 TTCATCAGCGGTGACACGAATGCCAAGACTCTCCAGGACAAGGACATTCATATTTGGGAC 80805 Query 34340 GCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATC-TCGGGAGGAGGGCGA 34398 | | || || || | || | |||| ||| | || ||| || | ||||| Sbjct 80806 GGCAATGGATCGAAGGAATACCTAGG-AAGCATCGGTCTCGGTCATCGCGAAGCAGGCGA 80864 Query 34399 CTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGA 34458 | || || || || || ||||||||| | |||||||| || ||||| | | | Sbjct 80865 TCTCGGTCCAGTGTATGGCTTCCAGTGGCGTCACTTTGGTGCCAAGTATACCGATATGCA 80924 Query 34459 AGCGGACTATTCGGGACAGGGAGCGGACCAGCT-GCAGTACGTGATCGACACCTTGAAGC 34517 || || || | || ||||| | ||| ||||| || | | || ||| ||| | ||| Sbjct 80925 CGCCGATTACACCGGTCAGGGTGTGGATCAGCTCGCTG-AGGTCATCCACAAGCTTAAGA 80983 Query 34518 GGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGA 34577 ||||| | ||| | | || | ||| || ||||| || || ||| || Sbjct 80984 CCAACCCGAACGACCGGCGTATTCTCTTGTCTGCATGGAATCCAGCAGACCTCAAGGAGA 81043 Query 34578 TGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCCT 34637 |||||||||| |||||||||| ||||||| ||||||||||||||||| ||||| || | Sbjct 81044 TGGCGCTCCCTCCGTGCCACATGTTCTGCCAGTTCTACGTCGCGAATGGCGAGCTCTCGT 81103 Query 34638 GCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTT 34697 |||| | || || ||||||| |||||||| | || |||||||| || || || |||| Sbjct 81104 GCCAAATGTACCAGCGATCGGCTGACATGGGCCTCGGTGTGCCGTTTAATATCGCCAGTT 81163 Query 34698 ACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTGGTGC 34757 |||| || | || |||||||||| |||| ||| | | || || | || | Sbjct 81164 ACGCGTTGTTGACCCGATTGATCGCTCAGGTCGCTGGGCTCAAGGCCGGTGACTTCGTCC 81223 Query 34758 ATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGGATCCAGCTGC 34817 || | || ||||| || |||||| |||| ||| |||||| |||| ||||||| || Sbjct 81224 ATGTCATTGGTGATGCACACATCTACTTGAATCACCTCGAGCCGCTCAAGATCCAGTTGG 81283 Query 34818 AACGAGAGCCCCGACCGTTCCCCCAGCTCAAAATTATTCGAGCCGTCACCTCAATCGATG 34877 ||| || || |||||||| ||| || | || || ||| ||||| | Sbjct 81284 GACGCACTCCTCGTCCGTTCCCGACGCTTCGCATCAATCCAGAGAAGACCAACATCGACG 81343 Query 34878 ACTTTAGGAGCGAGGACTTCGTGTTGGAAGGGTACCGGCCGCAC 34921 ||||| | || ||||| | | |||| |||||| ||||||| Sbjct 81344 ACTTTGAGTTCGGAGACTTTGAGCTGGATGGGTACAAGCCGCAC 81387 Score = 201 bits (222), Expect = 1e-46 Identities = 470/704 (67%), Gaps = 4/704 (1%) Strand=Plus/Minus Query 6424 GTGCGGCCGGTACCCTTCCAACACGAAGTCCTCGCTCCTAAAGTCATCGATTGAGGTGAC 6483 ||||||| |||||| |||| | | ||||| || | |||||| ||||| ||| Sbjct 81387 GTGCGGCTTGTACCCATCCAGCTCAAAGTCTCCGAACTCAAAGTCGTCGATGTTGGTCTT 81328 Query 6484 GGCTCGAATAATTTTGAGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAG 6543 || || | || ||| |||||||| || || ||| || ||||||| ||| Sbjct 81327 CTCTGGATTGATGCGAAGCGTCGGGAACGGACGAGGAGTGCGTCCCAACTGGATCTTGAG 81268 Query 6544 CCGCTCGATGTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGG 6603 | |||||| ||| |||| |||||| || ||||| || | ||| || | || || | Sbjct 81267 CGGCTCGAGGTGATTCAAGTAGATGTGTGCATCACCAATGACATGGACGAAGTCACCGGC 81208 Query 6604 AACCAACCCCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAA 6663 | ||| |||| |||||||||| || | || |||||||| || || || || Sbjct 81207 CTTGAGCCCAGCGACCTGAGCGATCAATCGGGTCAACAACGCGTAACTGGCGATATTAAA 81148 Query 6664 CGGCACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATT 6723 |||||| || | |||||||| ||||||| || || | ||||| || ||||| ||||| Sbjct 81147 CGGCACACCGAGGCCCATGTCAGCCGATCGCTGGTACATTTGGCACGAGAGCTCGCCATT 81088 Query 6724 CGCGACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTT 6783 |||||||||||| ||||||| |||||||||| |||||||||||| ||| || Sbjct 81087 CGCGACGTAGAACTGGCAGAACATGTGGCACGGAGGGAGCGCCATCTCCTTGAGGTCTGC 81028 Query 6784 CGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGAT 6843 || ||||| || ||| | || | | ||| | ||||| ||| | ||| ||| Sbjct 81027 TGGATTCCATGCAGACAAGAGAATACGCCGGTCGTTCGGGTTGGTCTTAAGCTTGTGGAT 80968 Query 6844 CACGTACTGC-AGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACT 6902 || | | || ||||| ||| | ||||| || | || || || | | | ||||| Sbjct 80967 GACCT-CAGCGAGCTGATCCACACCCTGACCGGTGTAATCGGCGTGCATATCGGTATACT 80909 Query 6903 CCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGA- 6961 || |||||||| | ||||||||| || || || || || | ||||| | || ||| Sbjct 80908 TGGCACCAAAGTGACGCCACTGGAAGCCATACACTGGACCGAGATCGCCTGCTTCGCGAT 80849 Query 6962 GATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACC 7021 || | ||| |||| | || | || || || | ||||||| || | | Sbjct 80848 GACCGAGACCGATGCTT-CCTAGGTATTCCTTCGATCCATTGCCGTCCCAAATATGAATG 80790 Query 7022 CCCCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCG 7081 || | | ||| ||||| |||||| | || || | |||||||| |||||| || Sbjct 80789 TCCTTGTCCTGGAGAGTCTTGGCATTCGTGTCACCGCTGATGAACCACAACAGCTCTTCT 80730 Query 7082 ACCACGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGGAAA 7125 | ||||| |||| |||| || |||||||| |||| ||| || Sbjct 80729 GCAACGCCACGCCAGAACACGCGCTTCGTCGTGAGCACCGGGAA 80686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448258343225280