Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F001573145.1_202016-02-25] 724 sequences; 35,934,203 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq56 172 1e-37 seq52 140 8e-28 seq125 89.7 1e-12 >seq56 Length=164687 Score = 172 bits (190), Expect = 1e-37 Identities = 173/225 (77%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | ||| | || ||||| || |||||||| || |||| || || Sbjct 65747 ACGAAGACGGAGCACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGT 65688 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || || || ||||||||||| |||||||| || || || ||||| || |||| ||| Sbjct 65687 GCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGTGGAATTCC 65628 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||||||||||||||| || || ||||| || ||| |||| || || || ||||| Sbjct 65627 TTCCTTGTCCTGGATCTTCTGCTTGACGTTGTCAATGCTGTCCGATGGCTCGACATCGAG 65568 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||||| ||||| ||||| |||||||| ||||| | |||||| || Sbjct 65567 CGTGATGGTCTTGCCCGTCAGAGTCTTCACAAAGATCTGCATCTT 65523 >seq52 Length=165522 Score = 140 bits (154), Expect = 8e-28 Identities = 151/200 (76%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 || ||||| || |||||||| || |||| ||||| | || || || ||||||||||| Sbjct 28993 GTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGACCGTCCTCGAGCTGCTTGCCA 28934 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 || ||||| | || || || || ||||||| || ||||||||||||||||| || ||| Sbjct 28933 GCAAAGATCAATCGCTGCTGATCTGGAGGAATACCCTCCTTGTCCTGGATCTTCTGCTTC 28874 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 ||||| || || | ||| || || || || || ||||||||||| ||||| | ||| Sbjct 28873 ACGTTGTCAATCGAGTCCGAAGGCTCGACGTCAAGCGTGATCGTCTTACCCGTCAACGTC 28814 Query 211098 TTTACAAACACCTGCATTTT 211117 || || || | |||||| || Sbjct 28813 TTCACGAAGATCTGCATCTT 28794 Score = 131 bits (144), Expect = 4e-25 Identities = 164/225 (73%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | ||| | || ||||| || |||||||| || |||| ||||| Sbjct 10606 ACGAAGGCGGAGCACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGT 10665 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || || || |||||||| || || ||||| | || || || || ||||||| || Sbjct 10666 ACGGCCGTCCTCGAGCTGCTTACCAGCAAAGATCAATCGCTGCTGATCTGGAGGAATGCC 10725 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||||||||||||||| || || || || || || | ||| || || || || | Sbjct 10726 TTCCTTGTCCTGGATCTTCTGCTTGACATTGTCAATCGAGTCCGAAGGCTCGACGTCCAA 10785 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || ||||| |||||||| ||||| || || | |||||| || Sbjct 10786 CGTAATGGTCTTGCCCGTGAGTGTCTTGACGAAGATCTGCATCTT 10830 >seq125 Length=98586 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 |||||||||||||||||||| || || || || || ||| |||| || ||| || || Sbjct 38723 CCTTCCTTGTCCTGGATCTTCTGCTTGACATTGTCAATGCTGTCGGATGGTTCGACATCC 38782 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| |||||||| ||||| || || | |||||| Sbjct 38783 AGGGTGATGGTCTTCCCCGTGAGGGTCTTCACGAAGATCTGCAT 38826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159141247416260