Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F001573145.1_202016-02-25] 724 sequences; 35,934,203 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq715 194 4e-44 seq720 140 8e-28 seq56 122 2e-22 seq52 122 2e-22 seq718 109 1e-18 seq722 100 7e-16 >seq715 Length=275277 Score = 194 bits (214), Expect = 4e-44 Identities = 215/287 (75%), Gaps = 0/287 (0%) Strand=Plus/Plus Query 7441 ACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGATT 7500 || ||||||||||| || |||| ||||| ||| || | ||||| | || || | | Sbjct 263785 ACTTTATATTTAATTTTCGGTGCTTTTTCAGGTGTTGTTGGTACAACTTTATCAGTTTTA 263844 Query 7501 ATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTAC 7560 || || | |||||||| || ||| |||||| || | || ||| || | || Sbjct 263845 ATTAGAATGGAATTAGCACAACCTGGTAATCAAATTTTTATGGGAAATCATCATTTATAT 263904 Query 7561 AACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATG 7620 || ||| || |||| || ||||| ||| ||||||||||||| | |||||||| || | Sbjct 263905 AATGTTGTTGTTACAGCACATGCTTTTATTATGATTTTCTTCATGGTTATGCCTGTATTA 263964 Query 7621 ATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTT 7680 ||||| |||||||| || || || |||||||||||||||||||| || |||||||||||| Sbjct 263965 ATAGGTGGTTTCGGTAACTGGTTTGTTCCTTTAATGATTGGTGCACCAGATATGGCTTTT 264024 Query 7681 CCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATT 7727 || || | || ||||| |||||||| ||| |||| ||||| ||||| Sbjct 264025 CCTAGAATGAATAATATTAGTTTTTGGTTATTACCACCTTCGTTATT 264071 Score = 102 bits (112), Expect = 2e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 371365 AATGGTAATTTATGCATAGATAAACCAGGTACTCTCATATTAAATATCGTAGTAATAAAG 371424 || |||||| |||| | | ||||||||| ||||||||||| | || || | || ||| Sbjct 264290 AAAGGTAATCTATGGAAACTTAAACCAGGAGCTCTCATATTATAAATAGTTGAAAGAAAA 264231 Query 371425 TTTATAGCGCCTAGAAGAGAAGATATACCTGCAAGATGTAAACTAAATATTGCTAAATCG 371484 || ||||| |||| | ||| || ||||| | | ||||||||||||||| |||||||| Sbjct 264230 TTAATAGCACCTAATAAAGATGAAATACCCGATAAATGTAAACTAAATATAGCTAAATCT 264171 Query 371485 ACGGAACCGCCGGAGTGAGCT 371505 || ||| || ||||| ||| Sbjct 264170 ACAGAAGGACCAGAGTGTGCT 264150 Score = 95.1 bits (104), Expect = 3e-14 Identities = 73/87 (84%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 372296 ATAATTATCAGGATAATCGGGGATCCTTCGTGGCATACCCGCTAAACCAACGAAATGCAT 372355 |||| ||||||| |||| || || |||| |||||||| |||||||| | ||| ||||| Sbjct 265080 ATAAGCATCAGGAAAATCAGGTATTCTTCTAGGCATACCAGCTAAACCTAAGAAGTGCAT 265021 Query 372356 CGGGAAAAATGTTAAATTAACGCCAAT 372382 |||||||||||||||||||| ||||| Sbjct 265020 TGGGAAAAATGTTAAATTAACACCAAT 264994 >seq720 Length=15558 Score = 140 bits (154), Expect = 8e-28 Identities = 101/117 (86%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| ||||||||||| |||||||| ||||| || || ||||||||||||||||||||||| Sbjct 8476 GAAAATTTGACCATCTGTAATAGAAATAACGTTAGTTGGGATATAAGCAGAAACATCACC 8417 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATTTTTATT 4586 ||||||||||| | |||||||| ||||||| ||| |||||||| | |||||||| Sbjct 8416 AGCTTGTGTTTCAATTACAGGTAAAGCTGTTAATGAACCACCACCTATTTTTTTATT 8360 Score = 102 bits (112), Expect = 2e-16 Identities = 80/96 (83%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 5022 CAATACCTTGCCCCATACACAGGTTGTGTTATAGGAGAATATTTTAGAGATAATGGTAAA 5081 |||| | | || ||||| || ||||||| | ||||||||||||||||||||||||||||| Sbjct 8150 CAATTCTTAGCTCCATATACTGGTTGTGCTTTAGGAGAATATTTTAGAGATAATGGTAAA 8209 Query 5082 CATGCTTTAATCATCTACGATGATTTAAGTAAACAA 5117 |||||| | || | || ||||||||| ||||||| Sbjct 8210 CATGCTGTTATTTTTTATGATGATTTATCTAAACAA 8245 >seq56 Length=164687 Score = 122 bits (134), Expect = 2e-22 Identities = 162/225 (72%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | ||| | || || || || |||| ||||| || | | || Sbjct 65747 ACGAAGACGGAGCACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGT 65688 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| || |||||||| || || || ||||| || ||||| || Sbjct 65687 GCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGTGGAATTCC 65628 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||| |||||||| ||||| || || ||| |||| || | || || || | Sbjct 65627 TTCCTTGTCCTGGATCTTCTGCTTGACGTTGTCAATGCTGTCCGATGGCTCGACATCGAG 65568 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 |||||| ||||||||||||| ||| || | || | ||||| || Sbjct 65567 CGTGATGGTCTTGCCCGTCAGAGTCTTCACAAAGATCTGCATCTT 65523 >seq52 Length=165522 Score = 122 bits (134), Expect = 2e-22 Identities = 147/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || || || || |||| ||||| || | | || | || || || |||||||| ||| Sbjct 28993 GTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGACCGTCCTCGAGCTGCTTGCCA 28934 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 || ||||| | ||| || || || || |||||||| |||||||| |||||||| |||||| Sbjct 28933 GCAAAGATCAATCGCTGCTGATCTGGAGGAATACCCTCCTTGTCCTGGATCTTCTGCTTC 28874 Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696 || || || | ||| || | || ||||| | |||||||||||| |||||||| || Sbjct 28873 ACGTTGTCAATCGAGTCCGAAGGCTCGACGTCAAGCGTGATCGTCTTACCCGTCAACGTC 28814 Query 225697 TTTATGAACACTTGCATTTT 225716 || | ||| | ||||| || Sbjct 28813 TTCACGAAGATCTGCATCTT 28794 Score = 118 bits (130), Expect = 3e-21 Identities = 161/225 (72%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | ||| | || || || || |||| ||||| || | | || Sbjct 10606 ACGAAGGCGGAGCACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGT 10665 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| ||||| ||||| | ||| || || || || ||||| || Sbjct 10666 ACGGCCGTCCTCGAGCTGCTTACCAGCAAAGATCAATCGCTGCTGATCTGGAGGAATGCC 10725 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||| |||||||| ||||| ||| || || | ||| || | || ||||| || Sbjct 10726 TTCCTTGTCCTGGATCTTCTGCTTGACATTGTCAATCGAGTCCGAAGGCTCGACGTCCAA 10785 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||| || ||||||||||| | || || | ||| | ||||| || Sbjct 10786 CGTAATGGTCTTGCCCGTGAGTGTCTTGACGAAGATCTGCATCTT 10830 >seq718 Length=103621 Score = 109 bits (120), Expect = 1e-18 Identities = 88/104 (85%), Gaps = 2/104 (2%) Strand=Plus/Plus Query 6767 TTGAGAGAATGATCAGCCACATTGGGACTGA-AAACGGCCCAAGTCTTCTAAAAGGGCAG 6825 |||| |||||||||||||||||||||||||| | ||||||||| ||| | || ||||| Sbjct 3891 TTGAAAGAATGATCAGCCACATTGGGACTGAGACACGGCCCAA-ACTTTTTTAAAGGCAG 3949 Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAGTAAT 6869 ||||| |||| || ||||||| |||||||||||||| || ||| Sbjct 3950 CAGTGAGGAATTTTGGACAATGAGCGAAAGCTTGATCCAGCAAT 3993 Score = 102 bits (112), Expect = 2e-16 Identities = 112/147 (76%), Gaps = 3/147 (2%) Strand=Plus/Minus Query 7731 AGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACA 7790 || ||||||||| |||| |||| |||| ||||||||||||| ||||||||||| | | Sbjct 4556 AGAGTTGGTAAGGTTCTGCGCGTATTATCGAATTAAACCACATGCTCCACCGCTTGTGTA 4497 Query 7791 ATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAAT-ATT 7849 || |||||| || |||||| ||| | |||||| | || | ||||| ||| | || Sbjct 4496 GGCTCCCGTCAATTCCTTTGAATTTCGATCTTGCGATTATACTTTTCAGGCGGAGTGCTT 4437 Query 7850 TACGCGTTAGCTTAATTAATATAAAAA 7876 |||||||||||| || || |||||| Sbjct 4436 AACGCGTTAGCTTGAT--ATCTAAAAA 4412 >seq722 Length=6654 Score = 100 bits (110), Expect = 7e-16 Identities = 73/85 (86%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 372623 AGGTGTAACAGAATAGAGGGTAGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTTG 372682 ||||| ||||||||| |||| ||||||||||| ||||||| ||||||| ||||| | | Sbjct 4892 AGGTGGCACAGAATAGGGGGTTGCGACTGTTTAATAAAAACTTAGGACTCTGCTAAATGG 4833 Query 372683 TAAAACGATGTATAGGGTCTGACAC 372707 ||| | ||||||||||||||||||| Sbjct 4832 TAACATGATGTATAGGGTCTGACAC 4808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192520137782456