Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F001573145.1_202016-02-25] 724 sequences; 35,934,203 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq52 188 1e-42 seq56 172 1e-37 seq2 118 2e-21 seq4 104 5e-17 seq141 96.9 7e-15 >seq52 Length=165522 Score = 188 bits (208), Expect = 1e-42 Identities = 182/231 (79%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||||| ||| || |||| || ||||| || || |||||||||||||| | Sbjct 29023 CCACCACGCAAGCGGAGCACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAGTCCGAG 28964 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| || ||||| || || || || ||||||||||| || || || || ||| Sbjct 28963 AGGGTGCGACCGTCCTCGAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGATCTGGAGGA 28904 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||||||||| |||||||| ||||| ||| | || || | |||||||| ||||| Sbjct 28903 ATACCCTCCTTGTCCTGGATCTTCTGCTTC-ACGTTGTCAATCGAGTCCGAAGGCTCGAC 28845 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || || |||||||||||||||||||| ||||| ||||| |||||||| || Sbjct 28844 GTCAAGCGTGATCGTCTTACCCGTCAACGTCTTCACGAAGATCTGCATCTT 28794 Score = 143 bits (158), Expect = 6e-29 Identities = 172/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||| ||||| || |||| || ||||| || || |||||||||||||| | Sbjct 10601 CCGCCACGAAGGCGGAGCACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAGTCCGAG 10660 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || ||||| ||||| || || || || ||||||||||| || || || || ||| Sbjct 10661 AGGGTACGGCCGTCCTCGAGCTGCTTACCAGCAAAGATCAATCGCTGCTGATCTGGAGGA 10720 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || |||||||| |||||||| ||| || || | || || | |||||||| ||||| Sbjct 10721 ATGCCTTCCTTGTCCTGGATCTTCTGC-TTGACATTGTCAATCGAGTCCGAAGGCTCGAC 10779 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || | || || ||||| ||||| | ||||| ||||| |||||||| || Sbjct 10780 GTCCAACGTAATGGTCTTGCCCGTGAGTGTCTTGACGAAGATCTGCATCTT 10830 >seq56 Length=164687 Score = 172 bits (190), Expect = 1e-37 Identities = 179/232 (77%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || |||| || || || || || |||||||||||||| | Sbjct 65753 ACCACCACGAAGACGGAGCACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCCGA 65694 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||||||||||| ||||| || || || ||||| ||||||| ||| || ||||| || Sbjct 65693 GAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGTGG 65634 Query 282992 AATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 ||| || |||||||| |||||||| ||| || ||| | || || ||||||| | |||| Sbjct 65633 AATTCCTTCCTTGTCCTGGATCTTCTGC-TTGACGTTGTCAATGCTGTCCGATGGCTCGA 65575 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 | ||||| ||||| ||||| ||||||| |||||| || || |||||||| || Sbjct 65574 CATCGAGCGTGATGGTCTTGCCCGTCAGAGTCTTCACAAAGATCTGCATCTT 65523 >seq2 Length=488588 Score = 118 bits (130), Expect = 2e-21 Identities = 299/448 (67%), Gaps = 10/448 (2%) Strand=Plus/Plus Query 273617 CGTAGACCAACCGGTGCCAATACCGGAAGAACCATTCACCAGAATACTCGGGATAATTGG 273676 ||| ||||| || || || || || || || |||| ||| | | || | ||||| Sbjct 274734 CGTCGACCACCCAGTACCGATGCCCTCTGAGCCGTTCAACAGCAGCATGGGCAAGATTGG 274793 Query 273677 GACATAATATTCGGGCTCAATTTTATCACCATCGTCGTAAAGGTACTTCAACAAAGCATC 273736 || || || | ||||| | | | ||||||||||| | ||| ||| ||| || || Sbjct 274794 TACGTAGTAGTGAGGCTCCACTGGGTAACCATCGTCGTCGACGTAGCTCAGCAACGCGTC 274853 Query 273737 ATCCGTATCAACGAAAACCTTTCGCGTCTGAGGATTCAGTTTCGTGAAAATGTACCTGGC 273796 || || ||| | | | ||||| | | || |||||| ||||| | | Sbjct 274854 GTCGTCTTCTGGGAACAGCATACGCGTGTACTTCTGCAAGAACGTGAAGATGTAACGAGG 274913 Query 273797 ACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAACTGACCCTC-GGGCAGTAGCC 273855 ||||||| ||||| ||||| || || | || ||| || |||||| ||| || ||| Sbjct 274914 ACTCGCAGCATCCTTACCACCCTGAAGTCGCGTACCGAATTGACCCGAAGGGTAG-AGCA 274972 Query 273856 AGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATATTCACGATAGTCCCCTGAAGGG 273915 | | |||||| ||| ||||| ||||| ||||||||||| || || ||||| | Sbjct 274973 ATGGCAAGTTGTTCGCACCAACGTAGTCCTGCGCCATATTCACAATTGTTGAGTGAAGTG 275032 Query 273916 ATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATA-TAACCACTGAACTGAGCAACC 273974 || | || |||||||| || || | || || | | | ||||| || ||| || ||| Sbjct 275033 ATGCTTCACCGTGGTGGTATGCCGTATGCTC-ACTACAGTAACCCGCGAGCTGCGCCACC 275091 Query 273975 TTCACATCGCTCGTCAAGTTTCGCTTGA---ATGCGGAATACAACACCTTCCGCTGCGAG 274031 || || || |||| | |||||||||| | ||| |||||||||| ||||| || Sbjct 275092 TTGACTTCCTTCGTGAGTTTTCGCTTGAGACAAGCG---AACAACACCTTACGCTGTGAT 275148 Query 274032 GGCTTGAACCCATCAACGACCGATGGAA 274059 ||||| ||||||| || ||||||| Sbjct 275149 ACCTTGAGACCATCAATAACGGATGGAA 275176 >seq4 Length=313877 Score = 104 bits (114), Expect = 5e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 316154 CAAGTGATTCTTTGTCTTCACCGGAAGCATAACGCCATTGGATGTACTGATTGGGCGTCA 316213 |||| |||| ||||| |||||||| ||||||| ||||||||||| |||| || | Sbjct 172356 CAAGCAATTCCTTGTCCTCACCGGACTGGAAACGCCACTGGATGTACTGGTTGGCCGAGA 172297 Query 316214 TGTCAAGATGATCCTCGATGTGGTGGAAAGCGTGCTGTGCCACGTAAGCAAGACGCATAT 316273 |||| | || || || |||||||||||||||||||| || |||||||| | ||| | Sbjct 172296 TGTCCAAGTGCTCTTCAATGTGGTGGAAAGCGTGCTGGGCGACGTAAGCGAAACGAAGGG 172237 Query 316274 TTGGATGCTTCCAAACGCTACC 316295 || |||||||| || |||| Sbjct 172236 CAGGGTGCTTCCACACAGTACC 172215 Score = 95.1 bits (104), Expect = 3e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 316986 GAGGTCATGCTCAACATATGCAGTTTTCAGAATATCCTTCGTCGGGAACCCTTCCAACTG 317045 ||||| |||||||| | | || || || ||||| | | ||||| || || | ||| Sbjct 171533 GAGGTTGTGCTCAACGAACACGGTCTTGAGCTCATCCTGCTTTGGGAAGCCCTCGAGCTG 171474 Query 317046 ACCGTTCACAATCGCCCTCATCAGTGTCGACTTGCCAGCACCATTGGGGCCGCAAAGACC 317105 ||| ||| || || | ||| || |||||||| ||| ||| || || || || ||||| Sbjct 171473 ACCCTTCGAGATGGCACGCATGAGCGTCGACTTACCACAACCGTTTGGACCACAGAGACC 171414 Query 317106 ATACCGATTTCCCTTCTTCAGATTAAAACGGGTGTTGTTCAGAAGAATCTTACCACCATA 317165 || || | || ||| ||| || ||| | |||||| || | ||| ||||||| || Sbjct 171413 GTAACGGTGACCACGCTTGAGACGAAGACGAGCGTTGTTGAGCAAGATCATACCACCGTA 171354 Query 317166 TGCCAGAGAGAACTCACAATCACACAGGTC 317195 || || ||||||||||| | ||| || || Sbjct 171353 AGCGAGCGAGAACTCACAGTTACAGAGATC 171324 >seq141 Length=89168 Score = 96.9 bits (106), Expect = 7e-15 Identities = 280/431 (65%), Gaps = 0/431 (0%) Strand=Plus/Minus Query 273621 GACCAACCGGTGCCAATACCGGAAGAACCATTCACCAGAATACTCGGGATAATTGGGACA 273680 |||||||| || |||||||| | ||| || || |||| | ||||| | ||| ||| Sbjct 24732 GACCAACCAGTACCAATACCTTCACTACCGTTGACAAGAACCATTGGGATGACTGGAACA 24673 Query 273681 TAATATTCGGGCTCAATTTTATCACCATCGTCGTAAAGGTACTTCAACAAAGCATCATCC 273740 || | || || || || | |||||| |||| |||||| || | | | | | |||| Sbjct 24672 TACCACTCAGGTTCGATCGATTGACCATCATCGTCAAGGTAGTTGAGAACATCGTTATCC 24613 Query 273741 GTATCAACGAAAACCTTTCGCGTCTGAGGATTCAGTTTCGTGAAAATGTACCTGGCACTC 273800 | |||| | ||| | |||| | || || ||||| ||||| | | || Sbjct 24612 AGTGGATCGAAGAGGCATCGAGCAAGAGGTTCGAGGTTGGTGAAGATGTAACGAGGGCTT 24553 Query 273801 GCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAACTGACCCTCGGGCAGTAGCCAGTTT 273860 ||| ||||||||| || || | || ||| |||||||| | ||| ||| | || Sbjct 24552 GCACTGTCCTTGCCTCCCATCAATCGCGTACCGAACTGACCGTTTGGCGAGAGCAAATTG 24493 Query 273861 ATGTTGTTGCTACCGACGTAATCCTGAGCCATATTCACGATAGTCCCCTGAAGGGATACC 273920 ||||||||||| || ||| | || || ||||| || || || || || | | | || Sbjct 24492 ATGTTGTTGCTGCCCACGAAGTCTTGCGCCATGTTGACAATTGTACCGTATATACTTGCC 24433 Query 273921 TCGCCGTGGTGATAGGCGCTGTGTTCGGCGATATAACCACTGAACTGAGCAACCTTCACA 273980 || ||||| || || || || || | || || || | | || || ||||| | Sbjct 24432 TCACCGTGATGGTAAGCCGAATGCTCCGAGACGTATCCTCCAAGTTGGGCGACCTTGATT 24373 Query 273981 TCGCTCGTCAAGTTTCGCTTGAATGCGGAATACAACACCTTCCGCTGCGAGGGCTTGAAC 274040 || || ||| |||||| |||| | | | |||||| || || || ||||| || Sbjct 24372 TCCGTCTTCAGGTTTCGTTTGAGACAACAGAAGAGCACCTTACGTTGAGATGGCTTAAAA 24313 Query 274041 CCATCAACGAC 274051 ||||| || || Sbjct 24312 CCATCGACAAC 24302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046729490185496