Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F001573145.1_202016-02-25] 724 sequences; 35,934,203 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq52 152 4e-32 seq56 131 1e-25 seq125 91.5 1e-13 >seq52 Length=165522 Score = 152 bits (168), Expect = 4e-32 Identities = 162/212 (76%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||| ||| | ||| |||||| ||||||||||| || | ||| || |||| || Sbjct 10618 CACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGGCCGTCCTC 10677 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||| || ||||||||||| ||||||||||||| ||| | |||||||| ||| Sbjct 10678 GAGCTGCTTACCAGCAAAGATCAATCGCTGCTGATCTGGAGGAATGCCTTCCTTGTCCTG 10737 Query 44248 TATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305 ||||||||||| || ||| | || | ||| | | || || |||| |||||| ||| Sbjct 10738 GATCTTCTGCTTGACATTGT--CAATCGAGTCCGAAGGCTCGACGTCCAACGTAATGGTC 10795 Query 44306 TTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || |||||||| ||||| |||||||| ||||| Sbjct 10796 TTGCCCGTGAGTGTCTTGACGAAGATCTGCAT 10827 Score = 149 bits (164), Expect = 5e-31 Identities = 159/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||| ||| | ||| |||||| ||||||||||| || | ||| ||| |||| || Sbjct 29006 CACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGACCGTCCTC 28947 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||| || ||||||||||| ||||||||||||| ||| | ||| ||||| ||| Sbjct 28946 GAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGATCTGGAGGAATACCCTCCTTGTCCTG 28887 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||||||||||| | | || | ||| | | || || || | ||| |||||||| Sbjct 28886 GATCTTCTGCTTCACGTTGTCAATCGAGTCCGAAGGCTCGACGTCAAGCGTGATCGTCTT 28827 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| | |||||||||||||| ||||| Sbjct 28826 ACCCGTCAACGTCTTCACGAAGATCTGCAT 28797 >seq56 Length=164687 Score = 131 bits (144), Expect = 1e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||| ||| | || |||||| ||||||||||| || | ||| ||| |||| || Sbjct 65735 CACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTC 65676 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||| ||||| ||||||| ||||||||| |||| || | |||||||| ||| Sbjct 65675 GAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGTGGAATTCCTTCCTTGTCCTG 65616 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||||||||| | | | ||| |||| | | || || || | ||| || ||||| Sbjct 65615 GATCTTCTGCTTGACGTTGTCAATGCTGTCCGATGGCTCGACATCGAGCGTGATGGTCTT 65556 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| || |||||||| ||||| ||||| Sbjct 65555 GCCCGTCAGAGTCTTCACAAAGATCTGCAT 65526 >seq125 Length=98586 Score = 91.5 bits (100), Expect = 1e-13 Identities = 89/113 (79%), Gaps = 4/113 (4%) Strand=Plus/Plus Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGAT 44284 || || ||||||||| ||| ||||||||||| || ||| | ||| |||||| | | Sbjct 38716 AGACATACCTTCCTTGTCCTGGATCTTCTGCTTGACATTGT--CAATGCTGTCGGATGGT 38773 Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || |||| || || ||||| ||||||||||||||||||||||| ||||| Sbjct 38774 TCGACATCCAGGGTGATGGTCTTCCCCGTGAGGGTCTTCACGAAGATCTGCAT 38826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359987223534708