Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F001573145.1_202016-02-25] 724 sequences; 35,934,203 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq52 145 7e-30 seq56 143 2e-29 >seq52 Length=165522 Score = 145 bits (160), Expect = 7e-30 Identities = 162/214 (76%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712 ||||| |||| ||| ||||||||| ||||| ||||| ||||||||||| |||| || Sbjct 29006 CACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGACCGTCCTC 28947 Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCAT 41772 |||||||||||| || || |||| ||||| || || | |||| | |||||||||| Sbjct 28946 GAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGATCTGGAGGAATACCCTCCTTGTCCTG 28887 Query 41773 GATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTT 41831 ||| || |||||| ||| | | | | ||| | ||| || || | ||| ||||| | Sbjct 28886 GATCTTCTGCTTC-ACGTTGTCAATCGAGTCCGAAGGCTCGACGTCAAGCGTGATCGTCT 28828 Query 41832 TACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||||||||| |||||| ||||| |||||||| || Sbjct 28827 TACCCGTCAACGTCTTCACGAAGATCTGCATCTT 28794 Score = 125 bits (138), Expect = 7e-24 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || || || | ||||| |||| ||| ||||||||| ||||| ||||| ||| Sbjct 10601 CCGCCACGAAGGCGGAGCACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAGTCCGAG 10660 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || |||| ||||||||||| || || || |||| ||||| || || | ||| Sbjct 10661 AGGGTACGGCCGTCCTCGAGCTGCTTACCAGCAAAGATCAATCGCTGCTGATCTGGAGGA 10720 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || ||||||||| ||| || ||||| || | | | | ||| | ||| || Sbjct 10721 ATGCCTTCCTTGTCCTGGATCTTCTGCTT-GACATTGTCAATCGAGTCCGAAGGCTCGAC 10779 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 |||| ||| || || || ||||| || ||||| ||||| |||||||| || Sbjct 10780 GTCCAACGTAATGGTCTTGCCCGTGAGTGTCTTGACGAAGATCTGCATCTT 10830 >seq56 Length=164687 Score = 143 bits (158), Expect = 2e-29 Identities = 172/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| |||| || ||||||||| ||||| ||||| ||| Sbjct 65752 CCACCACGAAGACGGAGCACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCCGAG 65693 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| |||||||||||||||||||| ||||| ||||| ||||| | ||| Sbjct 65692 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGTGGA 65633 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAG-TGTCGCTCGACTCCAC 41814 | | ||||||||| ||| || ||||| ||| | || | |||| | ||| || Sbjct 65632 ATTCCTTCCTTGTCCTGGATCTTCTGCTT-GACGTTGTCAATGCTGTCCGATGGCTCGAC 65574 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || | ||| || || || |||||||| ||||| || || |||||||| || Sbjct 65573 ATCGAGCGTGATGGTCTTGCCCGTCAGAGTCTTCACAAAGATCTGCATCTT 65523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462299816148800