Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F002073175.1_202017-03-28] 340 sequences; 36,794,057 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq1 114 3e-20 seq69 104 5e-17 seq308 95.1 3e-14 >seq1 Length=1427593 Score = 114 bits (126), Expect = 3e-20 Identities = 301/452 (67%), Gaps = 8/452 (2%) Strand=Plus/Minus Query 230171 CGTTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTT 230230 ||||||| |||||| ||||||||| | |||| ||||| | || || || | Sbjct 982240 CGTTTGCTGAGCGTGTCGTCGCCTTCGCTGCCATTGAGGGTATCTTCTTCTCGGGTTCGT 982181 Query 230231 TCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACG 230290 ||||| | |||| ||||| ||| ||| | |||||||||||| | | || |||| Sbjct 982180 TCTGCTCGGTCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGCCTCAGCTTCTCGAACG 982121 Query 230291 AGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTA-TGTATTCAAAG 230349 || | |||||||| ||||| |||||||| | |||| | |||| | || ||| Sbjct 982120 AGCTTATCAGTCGTGACGAAGGTCTCCACTGTGACTTCGCCT-GCTTGCTCTACAACAAG 982062 Query 230350 CTCCAGAACAAGCTACCAT--TCGAGACGGTCAAACAAATCATTACAGAAGCAGTTGAAA 230407 || ||| || ||| ||| || || | | || | | || || || | Sbjct 982061 CTTGTCAACCGTCTCCCAGAGTCGCGAA--TCCACGAGATTGTCAGTGATGCCGTCACGA 982004 Query 230408 ACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGC-CTTATTGGCATGAACGCTGAA 230466 ||| ||||||||| | ||| | | ||| |||| ||||| || |||||| | | Sbjct 982003 TCGAGAAGGAGTTCGTCAAGGACTCGCTCCCA-GTCGAGCTTATCGGTATGAACTCGGCG 981945 Query 230467 CTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAG 230526 || ||| | ||||||||||| ||||| || || || || | || |||||| | | Sbjct 981944 CTCATGTGCCAGTACATCGAGTTCGTCGCTGATCGTCTTCTCCACGCTCTTGGTGTCTCG 981885 Query 230527 AAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAG 230586 || | |||||| | ||||| |||| | ||||| | || ||||| || || ||| Sbjct 981884 AAGATCTACAACGCGTCTAACCCATTTGACTGGATGGATATGATCTCGCTCCAGGGCAAG 981825 Query 230587 ACCAACTTCTTCGAAAAGCGTGTCAGTGACTA 230618 |||||||||||||| |||||||| |||| || Sbjct 981824 ACCAACTTCTTCGAGAAGCGTGTTGGTGAATA 981793 >seq69 Length=689117 Score = 104 bits (114), Expect = 5e-17 Identities = 142/196 (72%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 318991 TCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGA 319050 || ||||| |||||||| ||||||| ||||| |||||||||| | ||||| | Sbjct 383198 TCCTTGTCCTCACCGGACTGGAAACGCCACTGGATGTACTGGTTGGCCGAGATGTCCAAG 383257 Query 319051 TGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGC 319110 || || || |||||||||||||| ||||| || |||||||| | ||| | || ||| Sbjct 383258 TGCTCTTCAATGTGGTGGAAAGCGTGCTGGGCGACGTAAGCGAAACGAAGGGCAGGGTGC 383317 Query 319111 TTCCAAACACTA-CCGATGGTGGCTTCCATTTGTCCCGTGAGCACCTTAATGAGGGTGCT 319169 ||||| ||| || |||| | |||| || | || || || | || ||| || | ||| Sbjct 383318 TTCCACACAGTACCCGACGTTGGC-TCGACTTCACCAGTCAACATCTTGATCATGGTCGA 383376 Query 319170 TTTCCCCGCACCGTTT 319185 || || ||||||||| Sbjct 383377 CTTACCAGCACCGTTT 383392 >seq308 Length=1002524 Score = 95.1 bits (104), Expect = 3e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| | ||||||| | |||||||||||||||||| Sbjct 427458 GCCCGTCTAGCTCAGTCGGTAGAGCGCTGGCCTTTTAAGCCAGTGGTCGTGGGTTCGAGC 427517 Query 165770 CCCACGATGGGC 165781 |||||| |||| Sbjct 427518 CCCACGGGGGGC 427529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057819391854200