Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F002073175.1_202017-03-28] 340 sequences; 36,794,057 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1 334 8e-87 seq296 132 5e-26 >seq1 Length=1427593 Score = 334 bits (370), Expect = 8e-87 Identities = 591/856 (69%), Gaps = 4/856 (0%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 ||||| ||||| ||||||||||| ||| |||||| | ||||| || || | ||| Sbjct 982691 GAGCCTCTGCTTCGCGAGAACCCAAACCGATTCGTGCTCTTCCCGATCCAGGAGAAGGAG 982632 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCT- 116694 || ||| |||||||| ||||| || || |||||||| ||||||||| | || || Sbjct 982631 ATCTGGGATATGTACAAGAAGGCGGAAGCCAGCTTCTGGACGGTCGAGGAGATCGATCTT 982572 Query 116695 GTCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCA 116754 || || | | | || ||||||| | ||| |||||| ||||| || ||||||||||| Sbjct 982571 GTGCACGACCTCAAG-GACTGGGGCAACATGACCGACAATGAGCGTCACTTCATCAAGCA 982513 Query 116755 CGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTT 116814 |||||| || || ||||| ||||| || || || || |||||||| || | | | || Sbjct 982512 CGTGCTCGCGTTCTTCGCTGCCAGTGATGGTATTGTGAACGAGAACCTTGCCATGAACTT 982453 Query 116815 CGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGA 116874 | | || || |||||| | || || || |||||||||||||| ||||| ||||| || Sbjct 982452 CAGCAACGAAGTCCAGGTGCCTGAAGCCCGCTGCTTCTACGGCTTCCAGATTGCCATTGA 982393 Query 116875 GAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGA 116934 |||| | ||| |||||||||| ||| | || ||||||||| | | | | || Sbjct 982392 GAACATCCACCCGGAAATGTACTCGCTGTTGATTGACACGTACATCAAGGATGCCGCCGA 982333 Query 116935 GAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTG 116994 |||| || ||||| |||||| ||||| || || ||||| | |||||||| | || Sbjct 982332 GAAGAACCACTTGTTCCGCGCCATTGAGACAATCCCATGCGTGCAGAAGAAGGCCAACTG 982273 Query 116995 GGCGCTGCGCTGGATCGCCGGCAGAG-AGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCG 117053 |||||| |||||| | | ||||| | ||||| || | ||||| | || ||||||| Sbjct 982272 GGCGCTCCGCTGGTGTGAC-TCAGAGAACGCCGCGTTTGCTGAGCGTGTCGTCGCCTTCG 982214 Query 117054 CGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAAC 117113 | ||| | ||||| ||||||| ||||| ||| | | | || ||||||||||| | Sbjct 982213 CTGCCATTGAGGGTATCTTCTTCTCGGGTTCGTTCTGCTCGGTCTTCTGGCTCAAGAAGC 982154 Query 117114 GCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGC 117173 | || |||||||| ||||| | ||| |||||||| ||| | ||||| ||||| | Sbjct 982153 GTGGTCTCATGCCTGGCCTCAGCTTCTCGAACGAGCTTATCAGTCGTGACGAAGGTCTCC 982094 Query 117174 ATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCGCG 117233 | || ||||| ||||| ||||| | ||| | | || | || | | | |||| Sbjct 982093 ACTGTGACTTCGCCTGCTTGCTCTACAACAAGCTTGTCAACCGTCTCCCAGAGTCGCGAA 982034 Query 117234 TCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGC 117293 || ||||| |||| || || ||| | |||||| || ||| ||| || |||| | Sbjct 982033 TCCACGAGATTGTCAGTGATGCCGTCACGATCGAGAAGGAGTTCGTCAAGGACTCGCTCC 981974 Query 117294 CGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCG 117353 | || || | || | || | | |||| || ||||||||||||||||| | Sbjct 981973 CAGTCGAGCTTATCGGTATGAACTCGGCGCTCATGTGCCAGTACATCGAGTTCGTCGCTG 981914 Query 117354 ACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCGCTGGACT 117413 | | || || | || || | | | | ||| ||||||| || | ||||| | |||| Sbjct 981913 ATCGTCTTCTCCACGCTCTTGGTGTCTCGAAGATCTACAACGCGTCTAACCCATTTGACT 981854 Query 117414 TTATGAACCTCATCTC 117429 ||| | | ||||| Sbjct 981853 GGATGGATATGATCTC 981838 >seq296 Length=213998 Score = 132 bits (146), Expect = 5e-26 Identities = 158/209 (76%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| ||||| || || || || || || |||||||| |||||||| |||| ||||| || Sbjct 98532 AAAGATGCAGATCTTTGTGAAGACTCTGACGGGCAAGACCATCACGCTCGATGTCGA-GC 98474 Query 40746 CACCG-ACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCG 40803 || || ||||| | | |||| ||||| | || || | ||||| || || || || | Sbjct 98473 CATCGGACAGCATTGACAACG-TCAAGCAGAAGATCCAGGACAAGGAAGGAATTCCACCA 98415 Query 40804 GACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 40863 |||||||| || || |||| ||| ||||| ||||| || |||| ||||| ||| ||| Sbjct 98414 GACCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGAC 98355 Query 40864 TACAACATCCAGAAGGAGGCCACGCTGCA 40892 |||||||||||||||||| | || |||| Sbjct 98354 TACAACATCCAGAAGGAGTCGACCTTGCA 98326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515217010318400