Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F002073175.1_202017-03-28] 340 sequences; 36,794,057 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq14 158 1e-33 seq296 118 9e-22 seq47 91.5 1e-13 seq235 86.0 5e-12 >seq14 Length=753269 Score = 158 bits (174), Expect = 1e-33 Identities = 272/395 (69%), Gaps = 2/395 (1%) Strand=Plus/Minus Query 133011 TTCAGCGATTGACTCTGATCTATGAAAGGAGCACGGTCGGCGGCCATGTTTATTATACAC 133070 || ||||| |||||||| ||||||| | |||||||||||||||||| | | | | Sbjct 125157 TTGAGCGACTGACTCTGGCAGATGAAAGCACCACGGTCGGCGGCCATGTCAAGAACAGCC 125098 Query 133071 TTTGATTTGATCTCCCATGCCGTCTTGAAGAGATTCTTGACATGCTGTGGTATTTCGTCA 133130 || ||||||||||| |||||||| | | ||| || |||| || || | Sbjct 125097 TTCTGCTTGATCTCCCACACCGTCTTGTACTTGTCCTTCACCGGCTGAGGAATCACACGC 125038 Query 133131 ATGTTCTGCACGGACCCGTTTTCGGCCAAAATCTTGTTGCGCAATTCCGGAGTGTAAATG 133190 | |||||||| || |||| ||| | |||| |||||||| |||||| || | ||| Sbjct 125037 ACATTCTGCACCGAACCGTGGTCGTGGAGGATCTGGTTGCGCACTTCCGGCGTCCAGATG 124978 Query 133191 TCGAGATCGATTAGCGCTTTGACGAGATACTGGTTGACCA-CTTGAAACTCGCCGGCGAG 133249 | | ||||| | | | || | || |||| ||| || | | || |||||||| || || Sbjct 124977 CCCAACTCGATCAACTCCTTCATCAGGTACTTGTTCACGATCGTG-AACTCGCCCGCAAG 124919 Query 133250 AACGCGTCTGAGATATACATTCGACGTGAACGGTTCGAAAGATTCGTTGTTGCCGAGTAT 133309 || || | | || | || | |||||| || || | || |||||||| ||||| || Sbjct 124918 CACACGACGGTTGTACATGTTGGTCGTGAATGGCTCAATCGACTCGTTGTTRCCGAGGAT 124859 Query 133310 CTGCGCCGTCGTCGCCGTGGGCATGTACGCCACCAACAAAGAGTTTCTTACGCCGTACTT 133369 ||| ||||||| || || ||||| ||||| |||||| ||||| | || |||| || Sbjct 124858 CTGYGCCGTCGAYGCYGTTGGCATAGGCGCCAACAACAACGAGTTGCGCACACCGTGCTC 124799 Query 133370 GTTTATGTTGCACTGCAATTCGTTCCAGTCCCACA 133404 | | | || ||| ||||||||||||||| Sbjct 124798 CATCACCTGAGCCTTCAACGCGTTCCAGTCCCACA 124764 Score = 149 bits (164), Expect = 5e-31 Identities = 330/493 (67%), Gaps = 6/493 (1%) Strand=Plus/Plus Query 132915 GTGCGCAAATAATACATGCCCGTTTTCAGTTTTTTCTCCCACGCGTAAAAGTGTATGCTC 132974 ||||| | || ||||| ||||| |||| | |||| ||| || || ||||| || | Sbjct 129923 GTGCGGAGGTAGTACATACCCGTCTTCAATCCCTTCTTCCATGCATAGAAGTGCATCGAC 129982 Query 132975 GACACC--ACCGAGTAAGTGGGTTCGGCGACAAATAAATTCAGCGATTGACTCTGATCTA 133032 | || | || || || || || || | | | |||| ||||||||| || | Sbjct 129983 GTCAACTTACTGATC--GTCGGCTCAGCAATATGCACGTTCATCGATTGACTTTGGCAAA 130040 Query 133033 TGAAAGGAGCACGGTCGGCGGCCATGTTTATTATACACTTTGATTTGATCTCCCATGCCG 133092 || | | | ||||||||||||||| | | ||| ||| ||||||||||| ||| Sbjct 130041 TGTATGCACCACGGTCGGCGGCCAAATCGAGGATAGCCTTCTGCTTGATCTCCCACACCG 130100 Query 133093 TCTTGAAGAGATTCTTGACATGCTGTGGTATTTCGTCAATGTTCTGCACGGACCCGTTTT 133152 ||||| | | ||| || |||| || || | | |||||||| || |||| | Sbjct 130101 TCTTGTACTTGTCCTTCACCGGCTGAGGAATCACACGCACATTCTGCACCGAACCGTGGT 130160 Query 133153 CGGCCAAAATCTTGTTGCGCAATTCCGGAGTGTAAATGTCGAGATCGATTAGCGCTTTGA 133212 || | |||| |||||||| |||||| || | ||| | | ||||| | | | || | Sbjct 130161 CGTGGAGGATCTGGTTGCGCACTTCCGGCGTCCAGATGCCCAACTCGATCAACTCCTTCA 130220 Query 133213 CGAGATACTGGTTGACCA-CTTGAAACTCGCCGGCGAGAACGCGTCTGAGATATACATTC 133271 || |||| ||| || | | || |||||||| || || || || | | || | || Sbjct 130221 TCAGGTACTTGTTCACGATCGTG-AACTCGCCCGCAAGCACACGACGGTTGTACATGTTG 130279 Query 133272 GACGTGAACGGTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGC 133331 | |||||| || || | || |||||||| ||||| ||||| ||||||| || || ||| Sbjct 130280 GTCGTGAATGGCTCAATCGACTCGTTGTTRCCGAGGATCTGYGCCGTCGAYGCYGTTGGC 130339 Query 133332 ATGTACGCCACCAACAAAGAGTTTCTTACGCCGTACTTGTTTATGTTGCACTGCAATTCG 133391 || ||||| |||||| ||||| | || |||| || | | | || ||| || Sbjct 130340 ATAGGCGCCAACAACAACGAGTTGCGCACACCGTGCTCCATCACCTGAGCCTTCAACGCG 130399 Query 133392 TTCCAGTCCCACA 133404 ||||||||||||| Sbjct 130400 TTCCAGTCCCACA 130412 >seq296 Length=213998 Score = 118 bits (130), Expect = 9e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | || ||||| || || |||||||| || | ||||| ||||| Sbjct 98319 CACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTC 98378 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||| || || ||| |||| ||||||||||| || || || || || |||||||| Sbjct 98379 GAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGTGGAATTCCTTCCTTGTCCTG 98438 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || || | || | | |||||| |||||| |||| || | || || Sbjct 98439 GATCTTCTGCTTGACGTTGTCAATGCTGTCCGATGGCTCGACATCGAGCGTGATGGTCTT 98498 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| |||||||| || ||||| |||||||| Sbjct 98499 GCCCGTCAGAGTCTTCACAAAGATCTGCAT 98528 >seq47 Length=722260 Score = 91.5 bits (100), Expect = 1e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||||| || ||||| || || |||||||| || || ||||| |||||| Sbjct 455360 CACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAAGGTGCGGCCATCCTC 455419 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCC 118636 ||||| || |||||| |||| |||||||||||||| ||||| || || Sbjct 455420 AAGCTGCTTACCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCC 455467 >seq235 Length=453453 Score = 86.0 bits (94), Expect = 5e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 118584 TCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTG 118643 ||||||||||| || ||||| |||| | ||||||||||| ||||| ||||| |||||| Sbjct 11179 TCCTCGAGCTGCTTACCAGCAAAGATCAATCGCTGCTGATCTGGAGGAATGCCTTCCTTG 11238 Query 118644 TCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACC 118703 || || || || || || | || | | ||||| |||||| || | || | Sbjct 11239 TCCTGGATCTTCTGCTTGACGTTGTCAATCGAGTCCGAAGGCTCGACGTCCAACGTAATG 11298 Query 118704 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||||||| || || || || || |||||||| Sbjct 11299 GTCTTGCCGGTGAGTGTCTTGACGAAGATCTGCAT 11333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433828602315280