Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F002073175.1_202017-03-28] 340 sequences; 36,794,057 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq296 136 5e-27 seq282 86.0 7e-12 seq277 86.0 7e-12 seq235 86.0 7e-12 >seq296 Length=213998 Score = 136 bits (150), Expect = 5e-27 Identities = 168/226 (74%), Gaps = 8/226 (4%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | |||||| ||||| || |||||| || || ||||| || | || || || | Sbjct 98313 ACGGAGCACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCC 98372 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || |||||||| || ||||| || || ||||||||||| | || | | ||||| Sbjct 98373 GTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGTGGAATTCCTTCCTT 98432 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCG-TGTCGCTCGAT---TCCACATCGACCG 43143 |||| ||| || || |||| ||| | || | |||| |||| || ||||||| || Sbjct 98433 GTCCTGGATCTTCTGCTTGA-CGTTGTCAATGCTGTC---CGATGGCTCGACATCGAGCG 98488 Query 43144 TGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTTAC 43189 ||||||| |||||||| || ||||| |||||||| ||||| ||||| Sbjct 98489 TGATGGTCTTGCCCGTCAGAGTCTTCACAAAGATCTGCATCTTTAC 98534 >seq282 Length=275778 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| |||| |||||||||||||||| ||||| ||||||| Sbjct 275044 CTCCCCGTCCGGGAATTGAACCCGGGTCACCCGCGTGACAGGCGGGTATACTAACCACTA 275103 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 275104 TACTAACGAGGA 275115 >seq277 Length=340754 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| |||| |||||||||||||||| ||||| ||||||| Sbjct 73 CTCCCCGTCCGGGAATTGAACCCGGGTCACCCGCGTGACAGGCGGGTATACTAACCACTA 132 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 133 TACTAACGAGGA 144 >seq235 Length=453453 Score = 86.0 bits (94), Expect = 7e-12 Identities = 117/161 (73%), Gaps = 2/161 (1%) Strand=Plus/Plus Query 43027 CGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCT 43086 |||| || |||||||||||||| || || | ||||||||| || | || | || |||| Sbjct 11177 CGTCCTCGAGCTGCTTACCAGCAAAGATCAATCGCTGCTGATCTGGAGGAATGCCTTCCT 11236 Query 43087 TGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTG 43145 ||||| ||| || || |||| ||| | | | || ||| | || || || | ||| Sbjct 11237 TGTCCTGGATCTTCTGCTTGA-CGTTGTCAATCGAGTCCGAAGGCTCGACGTCCAACGTA 11295 Query 43146 ATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 ||||| ||||| || || ||||| || ||||| ||||| || Sbjct 11296 ATGGTCTTGCCGGTGAGTGTCTTGACGAAGATCTGCATCTT 11336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571815169775200