Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F002073175.1_202017-03-28] 340 sequences; 36,794,057 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq14 172 1e-37 seq1 111 3e-19 >seq14 Length=753269 Score = 172 bits (190), Expect = 1e-37 Identities = 427/636 (67%), Gaps = 19/636 (3%) Strand=Plus/Minus Query 248809 GATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATT 248868 ||||| |||||||| | ||||| ||||| |||||||| |||||||||| || ||| Sbjct 131730 GATTTTGAGTACGACTACTTTGGCTTCAAGACGCTGGAACGATCGTATCTCTTCCGCATT 131671 Query 248869 GATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCAC 248928 |||||||| | |||| || ||||| ||| | | || ||| | |||| || ||| Sbjct 131670 AATGGCAAGGTGATGGAGCGTCCACAGCAGATGATCTTACGCGTGTGTATCGGCATCCAC 131611 Query 248929 AAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGACA 248988 || || || || | | | || ||| |||| | ||| || ||| | || Sbjct 131610 AAAGAAGATATCGCCGGTGCTCTTCAGATGTACGACTACATGTCCCAAGGCTTCTTCACT 131551 Query 248989 CATGCCACACCGACGCTCTTCAACGCCGGTACCGTCAA-CAATCAGCTGAGCTCGTGCTT 249047 || | | |||| || || |||||| | ||||| | || | |||| || ||||| || Sbjct 131550 CACGGCTCACCAACTCTTTTCAACTCGGGTAC-GCCACGCCCTCAGTTGTCGTCGTG-TT 131493 Query 249048 TCTT-CTTGCCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGACGG 249106 |||| ||||||||| | || ||||| | || || || || |||||||| || | | | Sbjct 131492 TCTTGCTTGCCATGAAGGATGACTCCATTGAGGGTATCTACGACACGCTCAAGAA--CTG 131435 Query 249107 CGAAGATTTCT--AAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGA- 249163 || | | ||| || | || || || |||||| || | ||||||||| || | Sbjct 131434 CGCATCTATCTCCAAGTGGGCCGGTGGCATCGGTATCAGTATGCACAACATCCGTGCCAC 131375 Query 249164 --AGGGTTCGTACATCAAAGGTACAAATGGGGTCAGTGA-TGGTATCGTACCCCTCCTTC 249220 | ||| |||| ||||| || || || || |||| |||| || | | | Sbjct 131374 TAACAGTT---ACATTCGCGGTACGAACGGA-TCGTCGAATGGTCTCGTTCCAATGTTGC 131319 Query 249221 GATGCTTTGAGTCCACCGCCAGGTTCATCAACCAGGCCGGGCGC---CGAAAGGGGTCGT 249277 | || | ||| || | | | | |||||| ||| || || ||||| |||| Sbjct 131318 GTGTGTTCAACGACACGGCTCGCTACGTTGACCAGGGCGGAGGCAAGCGCAAGGGTTCGT 131259 Query 249278 TCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGA 249337 ||||||| || ||||| |||||||| || || || |||||| |||||||||| |||| Sbjct 131258 TCGCCATCTACTTGGAGCCATGGCACGCGGACATCTTCGAGTTCTTGGACTTGAAGAAGA 131199 Query 249338 ACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACT 249397 || |||| || |||||| | || ||||||||||| ||||| ||||| || | || | Sbjct 131198 ACCACGGTAATGAGCTCCATCGTGCTCGTGACCTCTTTTACGGGTTGTGGATCCCAGATT 131139 Query 249398 TGTTCATGCGCCGCGTCAAGGCCGACGGCGATTGGA 249433 |||||||| || || |||| |||| || |||| Sbjct 131138 TGTTCATGAAGCGTGTGGAGGCGAACGGTGAATGGA 131103 Score = 134 bits (148), Expect = 3e-26 Identities = 394/633 (62%), Gaps = 13/633 (2%) Strand=Plus/Plus Query 248809 GATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATT 248868 || || |||||||| | ||||| ||||| ||||| || ||||| | | ||| Sbjct 123446 GAYTTYGAGTACGACTACTTTGGCTTCAAGACGCTKGARMRRTCGTAYYTSYTSCGCATT 123505 Query 248869 GATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCAC 248928 ||||||| | |||| || ||||| ||| | | || ||| | || || ||| Sbjct 123506 RRTGGCAAGGTGATGGAGCGTCCACAGCAGATGATYTTRCGYGTGWGYATYGGYATCCAC 123565 Query 248929 AAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGACA 248988 || || || || | | || ||| ||| ||| | || | || Sbjct 123566 AARGAAGAYATYGCSGSKGCKCTYSAGAYSTACGAMTACATGTCCCARRRCTTCTTCACK 123625 Query 248989 CATGCCACACCGACGCTCTTCAACGCCGGTAC-CGTCAACAATCAGCTGAGCTCGTGCTT 249047 || | | || || | |||||| | ||||| | | | |||| | ||||| || Sbjct 123626 CACGSSWCRCCAACYYTKTTCAACKCKGGTACGCCWCGYCC-TCAGYTRTCGTCGTGYTT 123684 Query 249048 TCTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGACGGC 249107 | ||||| ||| | || ||||| | || || || || |||||||| || | || Sbjct 123685 CTTGCTTGCYATGAAGGATGACTCCATYGAGGGTATCTAYGACACGCTCAAGAACTGCGC 123744 Query 249108 GAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGA---A 249164 || || || | || || || |||||| || | ||||||||| || | | Sbjct 123745 WTSYATCTCCAAGTGGGCCGGTGGYATCGGTRTCAGYATGCACAACATCCGTGCCACTAA 123804 Query 249165 GGGTTCGTACATCAAAGGTACAAATGGGGTCAGTGA-TGGTATCGTACCCCTCCTTCGAT 249223 ||| |||| ||||| || || || || |||| |||| || | | || Sbjct 123805 CAGTT---ACATTCGCGGTACGAACGGA-TCGTCGAATGGTCTCGTTCCAATGTTGCGTG 123860 Query 249224 GCTTTGAGTCCACCGCCAGGTTCATCAACCAGGCCGGGCGC---CGAAAGGGGTCGTTCG 249280 || | ||| || | | | | |||||| ||| || || ||||| ||||||| Sbjct 123861 TGTTCAACGACACGGCTCGCTACGTTGACCAGGGCGGAGGCAAGCGCAAGGGTTCGTTCG 123920 Query 249281 CCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACA 249340 |||| || ||||| |||||||| || || || |||||| |||||||||| |||||| Sbjct 123921 CCATCTACTTGGAGCCATGGCACGCGGACATCTTCGAGTTCTTGGACTTGAAGAAGAACC 123980 Query 249341 ACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGT 249400 |||| || |||||| | || ||||| | || |||| ||||| || | || |||| Sbjct 123981 ACGGTAATGAGCTCCAYCGTGCTCGTGAYYTMTTYTACGSGTTGTGGATCCCAGATTTGT 124040 Query 249401 TCATGCGCCGCGTCAAGGCCGACGGCGATTGGA 249433 ||||| || || | | |||| || |||| Sbjct 124041 TCATGAAGCGTGTGGARKCGAACGGYGAMTGGA 124073 Score = 116 bits (128), Expect = 8e-21 Identities = 190/274 (69%), Gaps = 0/274 (0%) Strand=Plus/Plus Query 248417 CCATGTACATCACCAAGCGGGACGGGCGCAAAGAAAACGTTCTCTTCGACAAAATCTCGG 248476 |||||||| | |||||| ||||| ||||| ||| |||| |||||||| ||| ||| Sbjct 123027 CCATGTACGTGCTCAAGCGCGACGGACGCAAGGAAGACGTCAAGTTCGACAAGATCACGG 123086 Query 248477 CGCGCATCAAGAAGCTCTGTTATGGTCTGGAACCCAACTTCGTCGATCATGTGGCCATCG 248536 |||| ||||| |||||||| ||||||||| | | ||| |||||| | | ||| Sbjct 123087 CGCGTATCAACAAGCTCTGCTATGGTCTGAACGCTGACTACGTCGACCCAATCAAGATCT 123146 Query 248537 CCCAGAAAGTTATTTCGGGCGTCTACACCGGAGTAACAACGACAGAACTGGACACCTTAG 248596 | ||||| || | | || |||||| | || || || ||| | || |||| || | Sbjct 123147 CGCAGAAGGTGGTCGCTGGTGTCTACCCTGGTGTCACGACGTCCGAGTTGGATGAGTTGG 123206 Query 248597 CTGCGGAGACGGCGGCGTACATGGCGATTGCACACCCCGACTACTCGCTGCTGGCCGGGA 248656 | || ||||||||||||||| |||| |||||| |||| ||| | |||| | Sbjct 123207 CGGCCGAGACGGCGGCGTACTGCGCGACGCAACACCCTGACTTCTCCAAGTTGGCGGCCC 123266 Query 248657 GGATCGCCGTCTCAAGGCTTCACAAAGAAACGAA 248690 | ||| || |||| | | ||||| | ||||| Sbjct 123267 GCATCTCCATCTCCAACTTGCACAAGAACACGAA 123300 Score = 84.2 bits (92), Expect = 5e-11 Identities = 183/274 (67%), Gaps = 0/274 (0%) Strand=Plus/Minus Query 248417 CCATGTACATCACCAAGCGGGACGGGCGCAAAGAAAACGTTCTCTTCGACAAAATCTCGG 248476 |||||||| | |||||| ||||| || | ||| | || ||||||||| ||| | | Sbjct 132149 CCATGTACGTGCTCAAGCGAGACGGACGTCAGGAAGATGTCTCCTTCGACAAGATCACAG 132090 Query 248477 CGCGCATCAAGAAGCTCTGTTATGGTCTGGAACCCAACTTCGTCGATCATGTGGCCATCG 248536 | |||||| ||||||||| |||| ||| | | ||| ||| || | || ||| Sbjct 132089 CTCGCATCTCCAAGCTCTGTGATGGCCTGAACGCTGACTACGTTGACCCAGTCAAGATCA 132030 Query 248537 CCCAGAAAGTTATTTCGGGCGTCTACACCGGAGTAACAACGACAGAACTGGACACCTTAG 248596 | ||||| || | | || |||||| | || || || ||| | || |||| || | Sbjct 132029 CACAGAAGGTGGTCGCTGGTGTCTACCCTGGTGTCACGACGTCCGAGTTGGATGAGTTGG 131970 Query 248597 CTGCGGAGACGGCGGCGTACATGGCGATTGCACACCCCGACTACTCGCTGCTGGCCGGGA 248656 | || |||||||||||||| |||| |||||| |||| ||| | |||| | Sbjct 131969 CGGCCGAGACGGCGGCGTATTGCGCGACGCAACACCCTGACTTCTCCAAGTTGGCGGCCC 131910 Query 248657 GGATCGCCGTCTCAAGGCTTCACAAAGAAACGAA 248690 | ||| || |||| | | ||||| | ||||| Sbjct 131909 GCATCTCCATCTCCAACTTGCACAAGAACACGAA 131876 >seq1 Length=1427593 Score = 111 bits (122), Expect = 3e-19 Identities = 263/388 (68%), Gaps = 22/388 (6%) Strand=Plus/Plus Query 254001 CTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCG 254060 || || ||| |||| ||| |||| ||||| || || ||||||||||| || ||| | || Sbjct 843072 CTCCCGCATCTGCTCTTCTACGGGCCTCCAGGCACGGGCAAGACGTCGACGATCGTCGCC 843131 Query 254061 CTGGCCCGAACCCTGTTGGGCGAGGGGAACAT----GAGAGAGCG--CGTGC--TCGAGC 254112 |||| || |||| || |||| | ||| || ||| | ||| Sbjct 843132 GTGGCGCGTCAGTTGTTTGGTCC-----ACATTTCCGCAAGAACGGCCGTTTCTTGGAGT 843186 Query 254113 TGAACGCTTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGA-CTTTCTCC 254171 |||||||||| || || || || | | || || ||||| || |||||| |||| | Sbjct 843187 TGAACGCTTCCGATGATCGTGGTATCAAAGTGGTGCGCGAGAAAGTCAAGAGCTTTGCGC 843246 Query 254172 AAGATGTCGATTTCGTCGTTCCAACCCGGCTGTCCGCCTTTCAAGCTCGTGATCCTGGAC 254231 ||| || |||| || | ||| ||||| || || |||||| || | | ||||| Sbjct 843247 AAGGTG-CGATCA-GTAGCTCCG--CCGGCATGCCTCCGTTCAAGATCATCGTGCTGGAT 843302 Query 254232 GAGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGATGGAGACGCAC 254291 || || ||| | ||||| | ||||||||||| || || || || | |||||||| || Sbjct 843303 GAAGCCGACTCGATGACTGGTGACGCGCAGTCGGCGCTGCGTCGCATGATGGAGAACTAC 843362 Query 254292 TCCGTTGTGACGCGTTTTTGCCTGGTGTGCAACTACGT--GTCGAAGATCATCGCCCCGC 254349 ||| || ||||| |||||||| | || |||||||| |||| ||||||| || Sbjct 843363 TCCAAGGTCACGCGCTTTTGCCTCATTTGTAACTACGTGAGTCG--TATCATCGAGCCAA 843420 Query 254350 TGGCTTCTCGGTGCGCCAAGTTTCGATT 254377 | || || || || |||||||| || || Sbjct 843421 TTGCCTCGCGTTGTGCCAAGTTCCGCTT 843448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073761722405120