Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F002073175.1_202017-03-28] 340 sequences; 36,794,057 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1 168 1e-36 seq268 140 5e-28 >seq1 Length=1427593 Score = 168 bits (186), Expect = 1e-36 Identities = 559/850 (66%), Gaps = 32/850 (4%) Strand=Plus/Minus Query 125016 GACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGAT 125075 || || ||||| |||||||| ||||| | ||| ||| ||||||||||| ||| ||||| Sbjct 982634 GAGATCTGGGATATGTACAAGAAGGCGGAAGCCAGCTTCTGGACGGTCGAGGAGATCGAT 982575 Query 125076 CT-GTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTAT 125134 || || || | |||| | || |||| | |||| || | |||||| | || || Sbjct 982574 CTTGTGCACG-ACCTCAAGGACTGGGGCAACA---TGACCGACAATGAGCGTCACTTCAT 982519 Query 125135 ATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGAC 125194 |||| | | || ||||| || | | ||||| || || ||||| || || || | Sbjct 982518 CAAGCACGTGCTCGCGTTCTTCGCTGCCAGTGATGGTATTGTGAACGAGAACCT--TGCC 982461 Query 125195 ACGATTCTCTCAAGAGTTGACCA--TTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATC 125252 | || || | | | ||| | || || | ||||| ||||| ||||| || Sbjct 982460 ATGAACTTCAGCAACGAAGTCCAGGTGCCTGAAGCCCGCTGCTTCTACGGCTTCCAGATT 982401 Query 125253 ATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGAT 125312 ||||||||| | ||| ||||||||||||| ||||||||| |||||| ||| Sbjct 982400 GCCATTGAGAACATCCACCCGGAAATGTACTCGCTGTTGATTGACACGTACATCAAGGAT 982341 Query 125313 -CCGCAACGTAAA--CACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAA 125369 |||| | | | ||| || || ||| || || || | || | | | || Sbjct 982340 GCCGCCGAGAAGAACCACTTGTTCCG---CGCCATTGAGACAATCCCATGCGTGCAGAAG 982284 Query 125370 AAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTG 125429 ||||| | |||| | | || ||| || || || | ||| || || | | Sbjct 982283 AAGGCCAACTGGGCGCTCCGCTGGTGTGACTCAGAGAACGCCGCGTTTGCTGAGCGTGTC 982224 Query 125430 GTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTA-GTTTTGCGGCCATCTTTTG 125488 || || ||||| ||| | ||||| |||||||| |||||| ||| ||| | |||| || Sbjct 982223 GTCGCCTTCGCTGCCATTGAGGGTATCTTCTTCTCGGGTTCGTTCTGCT-CGGTCTTCTG 982165 Query 125489 GCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGA 125548 |||||||||||| || |||||||| || || | | |||||| |||| ||| || Sbjct 982164 GCTCAAGAAGCGTGGTCTCATGCCTGGCCTCAGCTTCTCGAACGAGCTTATCAGTCGTGA 982105 Query 125549 CGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTC--CCGAG 125606 ||| || || ||||||||||| ||| | || || | |||| | || ||| ||| Sbjct 982104 CGAAGGTCTCCACTGTGACTTCGCC-TGCT--TGCTCTACAACAAGCT-TGTCAACCGTC 982049 Query 125607 TGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAA 125666 | |||| | | || || | | ||||| | |||||||| | ||| || | Sbjct 982048 T-----CCCAGAGTCGCGAA--TCCACGAGATTGTCAGTGATGCCGTCACGATCGAGAAG 981996 Query 125667 GAGTTTCTAACCGAATCCCTACCGGTC-AGCATGATTGGCATGAACTGCAAGCTAATGTG 125725 ||||| | | || || || || ||| ||| | || || ||||||| ||| ||||| Sbjct 981995 GAGTTCGTCAAGGACTCGCTCCCAGTCGAGC-TTATCGGTATGAACTCGGCGCTCATGTG 981937 Query 125726 CGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGCCGCAAGATTTA 125785 | ||||||| ||||| || || |||||||| || ||| | || | ||||| || Sbjct 981936 CCAGTACATCGAGTTCGTCGCTGATCGTCTTCTCCACGCTCTTGGTGTCTCGAAGATCTA 981877 Query 125786 CAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTT 125845 |||||| || || ||||| | ||| | || || || |||| ||||||||||| Sbjct 981876 CAACGCGTCTAACCCATTTGACTGGATGGATATGATCTCGCTCCAGGGCAAGACCAACTT 981817 Query 125846 TTTCGAGAAG 125855 ||||||||| Sbjct 981816 CTTCGAGAAG 981807 >seq268 Length=430982 Score = 140 bits (154), Expect = 5e-28 Identities = 285/412 (69%), Gaps = 10/412 (2%) Strand=Plus/Plus Query 70067 GGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGAC 70126 |||||||| || |||||||| || ||||||| | | |||| || |||||||| || Sbjct 388804 GGCGATCTCGGTCCAGTGTATGGCTTCCAGTTGCGTCACTTTGGTGCCAAGTATACCGAT 388863 Query 70127 -TGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATT-GCAGACAATCATTGACACTC 70184 ||| | | || || | ||||||||||| ||||| | || || |||| ||| | Sbjct 388864 ATGCACGCC-GATTACACCGGTCAGGGTGTGGATCAGCTCGCTGAGG-TCATCCACAAGC 388921 Query 70185 TCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGC 70244 | |||||||| || | || || | || | ||| |||||||||| ||||| | Sbjct 388922 TTAAGACCAACCCGAACGACCGGCGTATTCTCTTGTCTGCATGGAATCCAGCAGACCTCA 388981 Query 70245 ACCAAATGGCACTACCACCGTGTCAC-TGTTTGGCTCAGTTTTAC-TCGTACGA-TGGCA 70301 | | ||||| || || ||||| ||| |||| || ||||| ||| ||| ||| |||| Sbjct 388982 AGGAGATGGCGCTTCCTCCGTGCCACATGTTCTGC-CAGTTCTACGTCG--CGAATGGCG 389038 Query 70302 AATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACA 70361 | | || ||| |||||| ||| | || ||||||||||||||||| || ||||| | Sbjct 389039 AGCTCTCGTGCCAAATGTACCAGCGATCGGCTGACATGGGCCTCGGTGTGCCGTTTAATA 389098 Query 70362 TTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGCGCACG 70421 | || || || | ||||||| | |||| ||||| | | || || || || | Sbjct 389099 TCGCCAGTTACGCGTTGTTGACCCGATTGATCGCTCAGGTCGCTGGGCTCAAGGCCGGTG 389158 Query 70422 AGTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCC 70473 | ||||| || |||||| || || ||| | || || |||||| ||||||| Sbjct 389159 ACTTCGTCCATGTCATTGGTGATGCACACATCTACTTGAATCACCTCGAGCC 389210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741056050498400