Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F002073175.1_202017-03-28] 340 sequences; 36,794,057 total letters Query= NC_005885.1 Length=58638 Score E Sequences producing significant alignments: (Bits) Value seq330 104 9e-18 >seq330 Length=798990 Score = 104 bits (114), Expect = 9e-18 Identities = 291/441 (66%), Gaps = 38/441 (9%) Strand=Plus/Minus Query 53536 GTACGGGCCGAGTTCAACACGGTGTTCCCCGGCCGGGATAAGGCCACGGACGGCTCGGTG 53595 || || || || |||||| ||| |||||| || || ||| || | || |||| | | Sbjct 523774 GTCCGTGCAGAATTCAACGCGGCATTCCCCAAGCGCGACAAGTCCTCCGATGGCTGGATC 523715 Query 53596 GGCGACCTCGCTCACCAGACCGGCTCCTCCGGCCACAACCCGGACCGGACCGGCAAGGCG 53655 |||||| ||| ||||| |||| ||||||| ||| || || || || Sbjct 523714 GGCGACA-CGCCCACCAATCCGGA----------ACAACCCCGACATCACGGGTAACGCC 523666 Query 53656 GAGTACAAGGACGGGGACAGCAAGGACGAGGTTCGCGCCATCGACGTGGACCGCGACCTG 53715 | |||||||||||| |||| |||| |||| || || ||||||||||||||| ||| || Sbjct 523665 GGGTACAAGGACGGCGACAACAAGAACGAAGTGCGTGCCATCGACGTGGACGCTGACTTG 523606 Query 53716 ATCCCGGGCTCGGCCACGGACTGGATGGAACTCGTCATCCAGTACCTGATCA--AGAAGG 53773 | | | ||||| | | | |||||| ||| |||||||| || ||| | || | Sbjct 523605 AAGTCCGACTCGGGC---GTCACCATGGAAGACGTGGTCCAGTACATGCTCACCAAAATG 523549 Query 53774 CCAGGGCCGGGGGGTACATCCCGTTCCGGTACATCATCTACAAGGGCCGGATCTGG-GCA 53832 | | | || |||||| |||||||| ||| | |||| ||| || |||||| ||| Sbjct 523548 C--GTGGTGGTACGTACATGCCGTTCCGCTACTTGATCTTCAACAAGCGCATCTGGAGCA 523491 Query 53833 CGCTCGGACGGCTGGCAGACCCGGACGTACACCGGCTCGAACAAGCACGACAAGCAC--G 53890 | | || ||| || | | ||||||| || |||| |||| ||| | | Sbjct 523490 AGAGC-AACAATTGGGAGCAACAGGCGTACACGGGGTCGAGTCCGCACACGGAGCGCCTG 523432 Query 53891 CCCATTTCTCGGGCGACTA-------------CACCCAGACCGCCGACGAGTGGACGGGC 53937 | ||||||| || ||||| ||| ||| |||||||||||| | ||| Sbjct 523431 CACATTTCT--GGGGACTATGGCACTGCGGTGCACTGAGAAGGCCGACGAGTGGTCTGGC 523374 Query 53938 TCGCTGGGC-CTGGCCTCGGT 53957 | |||||| |||||||||| Sbjct 523373 ACCCTGGGCTTTGGCCTCGGT 523353 Score = 95.1 bits (104), Expect = 5e-15 Identities = 286/440 (65%), Gaps = 24/440 (5%) Strand=Plus/Plus Query 53536 GTACGGGCCGAGTTCAACACGGTGTTCCCCGGCCGGGATAAGGCCACGGACGGCTCGGTG 53595 || || || || |||||| ||| |||||| || || ||| || |||| |||| | | Sbjct 536791 GTCCGTGCTGAATTCAACGCGGCTTTCCCCAAGCGTGACAAGTCCTCGGATGGCTGGATC 536850 Query 53596 GGCGACCTCGCTCACCAGACCGGCTCCTCCGGCCACAACCCGGACCGGACCGGCAAGGCG 53655 ||||| ||| || || | | || || |||||||| ||| | || | | Sbjct 536851 GGCGATGCCGCCCATCAAAAGGAAAAGTCGGGACACAACCCCGACATCTCGGGTACTCCC 536910 Query 53656 GAGTACAAGGACGGGGACAGCAAGGACGAGGTTCGCGCCATCGACGTGGACCGCGACCTG 53715 |||||||||||||| || |||||| |||| || || ||||||||||| ||| ||| || Sbjct 536911 GAGTACAAGGACGGCGATAGCAAGAACGAAGTGCGTGCCATCGACGTCGACTCGGACTTG 536970 Query 53716 ATCCCGGGCTCGGCCACGGACTGGATGGAACTCGTCATCCAGTACCTGATCAAGAAGGCC 53775 | | | ||||| | | |||||| |||| | |||||| || ||| ||| Sbjct 536971 AAGTCCGACTCGGGC---GTTACCATGGAAGACGTCGTGCAGTACTTGCTCACCAAGTTG 537027 Query 53776 AGGGCCGGGGGGTACATCCCGTTCCGGTACATCATCTACAAGGGCCGGATCTGG-GCACG 53834 | | || |||||| |||||||| ||| | |||| ||| || || ||| ||| | Sbjct 537028 CGTGGTGGCACGTACATGCCGTTCCGCTACTTGATCTTCAACAAGCGCATTTGGAGCAAG 537087 Query 53835 CTCGGACGGCTGGCAGACCCGGACGTACACCGGCTCGAACAAGCACGACAAGCAC--GCC 53892 | || |||| || | ||||||| || ||| |||| | ||||| || Sbjct 537088 AGC-AACAACTGGAAGCAAGAGGCGTACACGGGTGCGAGTCCGCACACCGAGCACCTGCA 537146 Query 53893 CATTTCTCGGGCGACTA---------------CACCCAGACCGCCGACGAGTGGACGGGC 53937 |||| || |||||||| ||| ||| |||||||||||| | || Sbjct 537147 CATT--TCCGGCGACTATGGCACAGCTGAACGTACCGAGAAGGCCGACGAGTGGTCTGGT 537204 Query 53938 TCGCTGGGCCTGGCCTCGGT 53957 ||||||| |||||||||| Sbjct 537205 AAGCTGGGCTTGGCCTCGGT 537224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 187519242888000