Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F002073175.1_202017-03-28] 340 sequences; 36,794,057 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq69 190 3e-44 seq114 188 1e-43 >seq69 Length=689117 Score = 190 bits (210), Expect = 3e-44 Identities = 204/268 (76%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||| | |||| | || ||||| || |||||||| || |||||||||||||| || Sbjct 43480 GCCAAGCGTSACCGCAAGGTC-CTTCGTGACAACATCCAGGGTATCACCAAGCCAGCCAT 43538 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||||||| ||||||||||| ||||||||| || || ||| |||| || |||| Sbjct 43539 CCGTCGTCTGGCACGTCGTGGTGGTGTCAAGCGTATCAGCGGCTTGATCTACGAGGAGAC 43598 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| ||| | ||| | |||||| ||| ||| |||| ||| | || ||| || || Sbjct 43599 TCGTGGTGTCCTCAAGGTGTTCCTCGAGAACGTCATCCGTGACTCGGTCACCTACACTGA 43658 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||| || ||||| || || ||||||| ||||||| || ||||| || || || Sbjct 43659 GCACGCTCGCCGCAAGACCGTGACGGCCATGGACGTCGTCTACGCGTTGAAGCGCCAGGG 43718 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | || ||||| || ||||| Sbjct 43719 CCGCACCCTCTACGGTTTCGGTGGTTAA 43746 >seq114 Length=641512 Score = 188 bits (208), Expect = 1e-43 Identities = 202/267 (76%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| |||| ||||| || |||||||| || ||||||||||| || ||| Sbjct 226698 GCCAAGCGTCACCGCAAGGTGCTTCGTGACAACATCCAGGGTATCACCAAGCCTGCCATC 226757 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| |||||||||||||| ||||||||| |||| || ||| |||| ||||||| Sbjct 226758 CGTCGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATCTCGGGTTTGATCTACGAAGAGACC 226817 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| | ||| | ||||| ||| ||| |||| ||| | | ||| || ||| Sbjct 226818 CGTGGTGTCCTCAAGGTGTTCCTTGAGAACGTCATCCGTGACTCGGTGACCTACACTGAG 226877 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||| |||||||| || ||| ||||||| |||| || || | || ||||| ||| Sbjct 226878 CACGCTCGTCGTAAGACCGTGACCGCCATGGACGTCGTGTACGCCCTCAAGCGTCAGGGC 226937 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | || ||||| || ||||| Sbjct 226938 CGTACCCTCTACGGTTTCGGTGGTTAA 226964 Score = 188 bits (208), Expect = 1e-43 Identities = 202/267 (76%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| |||| ||||| || |||||||| || ||||||||||| || ||| Sbjct 228278 GCCAAGCGTCACCGCAAGGTGCTTCGTGACAACATCCAGGGTATCACCAAGCCTGCCATC 228219 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| |||||||||||||| ||||||||| |||| || ||| |||| ||||||| Sbjct 228218 CGTCGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATCTCGGGTTTGATCTACGAAGAGACC 228159 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| | ||| | ||||| ||| ||| |||| ||| | | ||| || ||| Sbjct 228158 CGTGGTGTCCTCAAGGTGTTCCTTGAGAACGTCATCCGTGACTCGGTGACCTACACTGAG 228099 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||| |||||||| || ||| ||||||| |||| || || | || ||||| ||| Sbjct 228098 CACGCTCGTCGTAAGACCGTGACCGCCATGGACGTCGTGTACGCCCTCAAGCGTCAGGGC 228039 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | || ||||| || ||||| Sbjct 228038 CGTACCCTCTACGGTTTCGGTGGTTAA 228012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074889135620