Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F002073175.1_202017-03-28] 340 sequences; 36,794,057 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq14 352 7e-92 seq268 113 1e-19 >seq14 Length=753269 Score = 352 bits (390), Expect = 7e-92 Identities = 864/1305 (66%), Gaps = 20/1305 (2%) Strand=Plus/Minus Query 363592 CCACAGATGTCTTCTTGCTTTCTT-CTAAAAATGAAGGACGATTCCATCGAGGGTATCTT 363650 || ||| |||| || || |||||| || |||||||| || ||||| |||||||||| Sbjct 131511 CCTCAGTTGTCGTCGTG-TTTCTTGCTTGCCATGAAGGATGACTCCATTGAGGGTATCTA 131453 Query 363651 TGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGAT 363710 ||||| || ||||| || || ||| |||||| || || || || ||| | || Sbjct 131452 CGACACGCTCAAGAACTGCGCATCTATCTCCAAGTGGGCCGGTGGCATCGGTATCAGTAT 131393 Query 363711 CCACAATGTTCGTGCACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCT 363770 ||||| | ||||| ||||||||||||||||| || |||| |||||||| || Sbjct 131392 GCACAACATCCGTGCCACTAACAGTTACATTCGCGGTACGAACGGATCGTCGAATGGTCT 131333 Query 363771 GGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAA 363830 ||||| ||| | |||||||| || | || || | ||||| |||||||| ||||| || Sbjct 131332 CGTTCCAATGTTGCGTGTGTTCAACGACACGGCTCGCTACGTTGACCAGGGCGGAGGCAA 131273 Query 363831 GCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCT 363890 |||||| || |||| || || || | ||||| || || || || || ||||| | Sbjct 131272 GCGCAAGGGTTCGTTCGCCATCTACTTGGAGCCATGGCACGCGGACATCTTCGAGTTCTT 131213 Query 363891 TGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACT 363950 || | ||| ||| || || ||| ||||| ||||| || || || | | Sbjct 131212 GGACTTGAAGAAGAACCACGGTAATGAGCTCCATCGTGCTCGTGACCTCTTTTACGGGTT 131153 Query 363951 TTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCA---GGTAAGAATTGGTCACTCTT 364007 ||| | | || || |||||||| |||||||| ||| |||| || | || Sbjct 131152 GTGGATCCCAGATTTGTTCATGAAGCGTGTGGAGGCGAACGGT--GAAT-GGAGTTTGTT 131096 Query 364008 TTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATA 364067 |||||| ||||| || |||||| | ||| ||||| || || | | | | || Sbjct 131095 CTGCCCAAACGAAGCTCAAGGTCTCTACGAGTGCTGGGGCGAGGAGTTCGAGACGTTGTA 131036 Query 364068 CGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTT 364127 || ||||||||| | |||||||||||||| ||||| || | || ||| |||| ||||| Sbjct 131035 CGCCAAGTATGAAGCTGAGGGAAAGGCTCGCAAGACCATCCGTGCTCAGCAGCTCTGGTT 130976 Query 364128 TGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTG 364187 |||||| | || || ||||| ||||| || || || |||||| ||||||| ||| || Sbjct 130975 CGCCATCCTCGAGTCACAGATCGAGACGGGTACGCCGTATATGCTGTACAAGGATGCGGC 130916 Query 364188 CAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGA 364247 || |||||||| ||||||||| |||| ||||| || | ||||||| | || || Sbjct 130915 GAATCGCAAGTCGAACCAGCAGAACCTCGGTACGATCCGCTCGAGCAACTTGTGCTGTGA 130856 Query 364248 GATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCT 364307 | | || || ||||| | | | || ||| || || || ||||||||||||||||| || Sbjct 130855 GGTGATCGAGTACACAGATTCGGATGAGGTCGCTGTGTGCAACCTTGCGTCGATCGCCCT 130796 Query 364308 TCCGGCGTTTGTAA---AAGATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTA 364364 ||| ||| || | | || || | | ||| | || | || || | ||| || | Sbjct 130795 ACCGAAGTTCGTGAGTGAGGACGGCAAGTATGATTTCGAGAAGCTCTACAAGGTAGCCAA 130736 Query 364365 TCATGCTACTTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGC 364424 || | || || || ||||||| ||||||| || || || || ||||| || || Sbjct 130735 ACAAGTGACGAAGAACCTGAACAAGGTCATCGACATCAACTACTACCCGATTCCAGAGGC 130676 Query 364425 CGAGCGTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGT 364484 | || || ||||| || || || |||||| | ||||| ||||| ||||| || Sbjct 130675 CAAGAAGAGCAACATGCGCCACCGTCCTATTGGTATCGGTGTGCAGGGTCTCGCCGATAC 130616 Query 364485 TTTTATGATGCTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGAT 364544 || || || | || || || || || ||||| | | || ||| | || Sbjct 130615 GTTCATCCTGATGAACTACGCGTTCGAAAGTGACGAGGCTCGCGAGTTGAACAAGCACAT 130556 Query 364545 CTTTGAAACAATGTATTTTGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGG 364604 ||| || || |||| |||| || ||| || ||| || || || | | || Sbjct 130555 CTTCGAGACGCTGTACTTTGGTGCGATGGAGGCGTCGATGGAGTTRGCTRAGGTSMAYGG 130496 Query 364605 AAAGTACTCTACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATG 364664 ||| || | | || || || | |||| | |||||||| || | || Sbjct 130495 TCCATACGAGACGTTYGCTGGCTCRCCAGTGAGCAAGGGCATCTTCCAGTTYGACATGTG 130436 Query 364665 GAATGTCACGCCATCTGTCCG----ATGGAACTGGGATACGCT--ACGTTCCAACGTTAA 364718 | ||| |||||||| ||| | ||| ||||| | || | | | || | || | Sbjct 130435 GGGTGTGACGCCATC-GTCGGGCATGTGGGACTGGAACGCGTTGAAGGCTC--AGGTGAT 130379 Query 364719 GAAGCATGGTACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACA 364778 | |||| ||| |||||||| | | ||||| ||||| || || || || || || Sbjct 130378 GGAGCACGGTGTGCGCAACTCGTTGTTGTTGGCGCCTATGCCAACRGCRTCGACGGCRCA 130319 Query 364779 GATCCTCGGAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGT 364838 ||||||||| |||||||||| | || || || || | ||| | || || || || Sbjct 130318 GATCCTCGGYAACAACGAGTCGATTGAGCCATTCACGACCAACATGTACAACCGTCGTGT 130259 Query 364839 TCTTTCCGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGA 364883 ||| | || || || || | || || |||||||| | ||||| Sbjct 130258 GCTTGCGGGCGAGTTCACGATCGTGAACAAGTACCTGATGAAGGA 130214 Score = 345 bits (382), Expect = 1e-89 Identities = 1037/1632 (64%), Gaps = 36/1632 (2%) Strand=Plus/Plus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||| |||| | ||||| | | ||| | || || | || ||| | || || Sbjct 123620 TTCACKCACGSSWCRCCAACYYTKTTCAACKCKGGTACGCCWCGYCCTCAGYTRTCGTCG 123679 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 || || | || |||||||| || ||||| |||||||||| ||||| || ||||| Sbjct 123680 TGYTTCTTGCTTGCYATGAAGGATGACTCCATYGAGGGTATCTAYGACACGCTCAAGAAC 123739 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA 363726 || || || |||||| || || || || ||| | || ||||| | ||||| Sbjct 123740 TGCGCWTSYATCTCCAAGTGGGCCGGTGGYATCGGTRTCAGYATGCACAACATCCGTGCC 123799 Query 363727 CAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGT 363786 ||||||||||||||||| || |||| |||||||| || ||||| ||| | ||| Sbjct 123800 ACTAACAGTTACATTCGCGGTACGAACGGATCGTCGAATGGTCTCGTTCCAATGTTGCGT 123859 Query 363787 GTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTT 363846 ||||| || | || || | ||||| |||||||| ||||| |||||||| || |||| Sbjct 123860 GTGTTCAACGACACGGCTCGCTACGTTGACCAGGGCGGAGGCAAGCGCAAGGGTTCGTTC 123919 Query 363847 GCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAAC 363906 || || || | ||||| || || || || || ||||| | || | ||| ||| Sbjct 123920 GCCATCTACTTGGAGCCATGGCACGCGGACATCTTCGAGTTCTTGGACTTGAAGAAGAAC 123979 Query 363907 ACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCAT 363966 || || ||| ||||| ||||| | || || | | ||| | | || Sbjct 123980 CACGGTAATGAGCTCCAYCGTGCTCGTGAYYTMTTYTACGSGTTGTGGATCCCAGATTTG 124039 Query 363967 TTTATGAAGCGCGTGGAGGCAGGTAAG--AATTGGTCACTCTTTTGCCCACACGAATGTC 364024 || |||||||| ||||| | | | | | ||| | || ||||| |||| | Sbjct 124040 TTCATGAAGCGTGTGGARKC--GAACGGYGAMTGGAGTTTGTTCTGCCCRAACGARGCYC 124097 Query 364025 CAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGG 364084 || || | | ||||| || || | | | | |||| ||||| ||| | | Sbjct 124098 MWGGYCTCTACRRSTGCTGGGGYGARGAGTTCGAGACRTTGTACGCCAAGTAYGAAGCTG 124157 Query 364085 AGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGC 364144 | ||||||||||| ||||| || | || ||| |||| ||||| || || | || || | Sbjct 124158 ARGGAAAGGCTCGCAAGACCATCCGTGCTCAGCAGCTCTGGTTCGCYATYCTCGAGTCRC 124217 Query 364145 AGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACC 364204 |||| ||||| || || || || ||| ||||||| || || || |||||||| |||| Sbjct 124218 AGATCGAGACGGGTACGCCKTAYATGYTGTACAAGGAYGCGGCSAAYCGCAAGTCGAACC 124277 Query 364205 AGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCG 364264 ||||| |||| ||||| || | ||||||| | || ||| | || || ||||| | Sbjct 124278 AGCAGAACCTCGGTACGATCCGCTCGAGCAACTTGTGCTGTGAGGTGATCGAGTACACAG 124337 Query 364265 CTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAA--- 364321 | | || ||| || || || ||||| |||||||| || || || ||| || Sbjct 124338 ATTCGGATGAGGTSGCTGTRTGCAACCTYGCGTCGATYGCYCTWCCRAAGTTCGTGRGTG 124397 Query 364322 AAGATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATC 364381 | || || | | || | || | | || | ||| || | | || || | Sbjct 124398 AGGAYGGCAAGTAYGAYTTCSAGAAGYTSTACMAGGTARCCAARMWRGTGACGAAGAACC 124457 Query 364382 TCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGC 364441 | ||||||| ||||||| || || || || || || || ||| || || |||| Sbjct 124458 TGAACAAGGTCATCGACATCAACTACTACCCRATYCCAGAGGCCAAGAAGAGYAACATGC 124517 Query 364442 GTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGA 364501 | || || || || ||| | ||||| ||||| ||||| || || || || | || Sbjct 124518 GCCACCGTCCTATYGGTMTCGGTGTGCAGGGTCTCGCCGATACGTTCATCCTGATGAACT 124577 Query 364502 TGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATT 364561 || || || || ||||| | | || ||| | ||||| || || |||| | Sbjct 124578 ACGCGTTCGAAAGTGACGAGGCTCGCGAGTTGAACAAGCACATCTTCGAGACGCTGTACT 124637 Query 364562 TTGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATG 364621 ||| || ||| || ||| || || || | | || ||| || | | Sbjct 124638 TTGGTGCGATGGAGGCGTCGATGGAGTTRGCTRAGGTSMAYGGTCCATACGAGACGTTYG 124697 Query 364622 AGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTG 364681 || || || | |||| | |||||||| || | ||| ||| |||||||| | Sbjct 124698 CTGGCTCRCCAGTGAGCAAGGGCATCTTCCAGTTYGACATGTGGGGTGTGACGCCATC-G 124756 Query 364682 TCCG----ATGGAACTGGGATACGCT--ACGTTCCAACGTTAAGAAGCATGGTACTCGCA 364735 || | ||| ||||| | || | | | || | || | | |||| ||| |||| Sbjct 124757 TCGGGCATGTGGGACTGGAACGCGTTGAAGGCTC--AGGTGATGGAGCACGGTGTGCGCA 124814 Query 364736 ACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACG 364795 |||| | | ||||| ||||| || || || || || ||||||||||| ||||||| Sbjct 124815 ACTCGTTGTTGTTGGCGCCTATGCCAACRGCRTCGACGGCRCAGATCCTCGGYAACAACG 124874 Query 364796 AGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTC 364855 ||| | || || || || | ||| | || || || || ||| | || || || Sbjct 124875 AGTCGATTGAGCCATTCACGACCAACATGTACAACCGTCGTGTGCTTGCGGGCGAGTTCA 124934 Query 364856 CGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCA 364915 || | || || |||||||| | ||||| | ||| || | || ||| || Sbjct 124935 CGATCGTGAACAAGTACCTGATGAAGGAGTTGATCGAGTTGGGCATCTG----GAC-GCC 124989 Query 364916 TGAAG-----AACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAG-GATTTC 364969 |||| ||| | ||| || || | ||||| |||||||| | | | |||| | Sbjct 124990 GGAAGTGCGCAACCAGATCCTCCACGACCACGGTTCGGTGCAGAATGTGCGTGTGATTCC 125049 Query 364970 -CAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGC-GAA--CTCTC 365025 ||| | ||||| | ||||| || || ||||| || || || ||| || | Sbjct 125050 TCAGCCG--GTGAAGGACAAGTACAAGACGGTGTGGGAGAT---CAAGCAGAAGGCTGTT 125104 Query 365026 ATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTC 365085 |||| ||||| ||||| || |||||||| ||||| ||||| |||||| | ||||| Sbjct 125105 CTTGACATGGCCGCCGACCGTGGTGCTTTCATCTGCCAGAGTCAGTCGCTCAACGTGCAT 125164 Query 365086 ATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGT 365145 || || |||| || | ||| | || || ||||| ||||| | ||||| || Sbjct 125165 ATTGCTGAGCCGACGATCAGTAAGTTGACGTCGATGCACTTCTATGCATGGAAGAAGGGA 125224 Query 365146 CTTAAGACAGGT 365157 | ||||||||| Sbjct 125225 TTGAAGACAGGT 125236 >seq268 Length=430982 Score = 113 bits (124), Expect = 1e-19 Identities = 349/530 (66%), Gaps = 10/530 (2%) Strand=Plus/Plus Query 111426 ATTTGGGATGGAAATGGATCACGTGACTTTCTAG-ATTCAGTTGGTCTTGTCGACAACGA 111484 |||||||| || |||||||| || | |||| | || | ||||| | | ||| Sbjct 388741 ATTTGGGACGGCAATGGATCGAAGGAATACCTAGGAAGCA-TCGGTCTCGGTCATCGCGA 388799 Query 111485 AGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAA 111544 || ||| |||||||| ||||| || || || || | ||| ||||||||||| | || | Sbjct 388800 AGCAGGCGATCTCGGTCCAGTGTATGGCTTCCAGTTGCGTCACTTTGGTGCCAAGTATAC 388859 Query 111545 AACCATGCACGACTCATATGATTCACAGGGAACTGATCAATTACAGAATGTCATTGATCA 111604 ||||||| | || ||||| ||||| | | ||||| | | Sbjct 388860 CGATATGCACGCCGATTACACCGGTCAGGGTGTGGATCAGCTCGCTGAGGTCATCCACAA 388919 Query 111605 AATTAAGAACAACCC-AACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATGCAT 111663 |||||| |||||| ||| | || || ||| | || ||||||||| ||| | Sbjct 388920 GCTTAAGACCAACCCGAACGAC-CGGCGTATTCTCTTGTCTGCATGGAATCCAGCAGACC 388978 Query 111664 TGGAAAAAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATGTACACGACGGGA 111723 | | | ||||| ||||| || || || | | |||||||| || || | ||| || Sbjct 388979 TCAAGGAGATGGCGCTTCCTCCGTGCCACATGTTCTGCCAGTTCTACGT-CGCGAATGGC 389037 Query 111724 T-GCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAAT 111782 ||| || ||||||||||| |||||||| ||||| || || || ||||| ||||||||| Sbjct 389038 GAGCTCTCGTGCCAAATGTACCAGCGATCGGCTGACATGGGCCTCGGTGTGCCGTTTAAT 389097 Query 111783 ATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTCAAACCGGGT 111842 || || |||||||| | | || | || |||||||| | | ||||| | ||| Sbjct 389098 ATCGCCAGTTACGCGTTGTTGACCCGATTGATCGCTCAGGTCGCTGGGCTCAAGGCCGGT 389157 Query 111843 GAATTCATTCACGTTATCGGAGATGCGCATGTTTACACAAACCACATTGATGCACTTAAA 111902 || ||| | || || || || ||||| || | ||| || ||| | || | || || Sbjct 389158 GACTTCGTCCATGTCATTGGTGATGCACACATCTACTTGAATCACCTCGAGCCGCTCAAG 389217 Query 111903 ACACAGTTGAAGCGCAAAC--CATACGATTTCCCAACGATTCATATCAAT 111950 | |||||| |||| | | | || ||||| ||| ||| |||||| Sbjct 389218 ATCCAGTTGGGACGCACTCCTCGTCCG--TTCCCGACGCTTCGCATCAAT 389265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303347922265880