Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F002073175.1_202017-03-28] 340 sequences; 36,794,057 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq14 150 2e-31 seq296 140 3e-28 seq47 96.9 3e-15 >seq14 Length=753269 Score = 150 bits (166), Expect = 2e-31 Identities = 1002/1586 (63%), Gaps = 71/1586 (4%) Strand=Plus/Plus Query 144742 TGGCTTGGTGCGCAAATAGTACATGCCCGTTTTGAGTCCCGAGCGCCAAGTGTAGTCGTG 144801 ||||| ||||| | |||||||| ||||| || | |||| ||| | ||| ||| Sbjct 129916 TGGCTGCGTGCGGAGGTAGTACATACCCGTCTTCAATCCCTTCTTCCATGCATAGAAGTG 129975 Query 144802 TATCGACGTCATCAGAGCGTACGTGGGCTCCGCCACAAACAAATTTAGCGATTGGCTTTG 144861 |||||||||| | | | ||| ||||| || | | || || | |||||| ||||| Sbjct 129976 CATCGACGTCAACTTACTGATCGTCGGCTCAGCAATATGCACGTTCATCGATTGACTTTG 130035 Query 144862 ATCAATGAAAGCGTTGCGGTCGGCGGCCATCTCAATCATA--CGTTTGCATTTCATTTCC 144919 |||| | || ||||||||||||| || | ||| | | ||| || || ||| Sbjct 130036 GCAAATGTATGCACCACGGTCGGCGGCCAAATCGAGGATAGCCTTCTGC--TTGATCTCC 130093 Query 144920 CAAGCGGTCTTGTACAAACGTTTAATGTGGTCCGGAATGCCGTCAATCGCCTGAATCGAC 144979 || | ||||||||| || | | | ||||| | | ||| | ||| Sbjct 130094 CACACCGTCTTGTACTTGTCCTTCACCGGCTGAGGAATCACACGCACATTCTGCACCGAA 130153 Query 144980 CCCTTGT-GCGCAA-ATATGGCGTTCCGCATTTCGGACGTGTACAGTTTTAACTTGATCA 145037 || | || | | | || ||| || |||| ||| | ||| | | |||| ||||| Sbjct 130154 CCGTGGTCGTGGAGGATCTGG--TTGCGCACTTCCGGCGTCCAGATGCCCAACTCGATCA 130211 Query 145038 AGTCGTCAATTAAGTACTGATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAAT 145097 | || | || | ||||| || |||| | |||||||| || | ||||||||| | Sbjct 130212 ACTCCTTCATCAGGTACTTGTTCACGATCGTGAACTCGCCCGCAAGCACACGACGGTTGT 130271 Query 145098 ACACGTTAGACGTGAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTG 145157 ||| ||| | |||||| || |||| |||||||| || || ||||| || || |||| | Sbjct 130272 ACATGTTGGTCGTGAATGGCTCAATCGACTCGTTGTTRCCGAGGATCTGYGCCGTCGAYG 130331 Query 145158 CGGTGGGCATGTACGCCACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCT 145217 | || ||||| ||||| ||| || || ||||||| ||||||| | | | | ||| Sbjct 130332 CYGTTGGCATAGGCGCCAACAACAACGAGTTGCGCACACCGTGCTCCATCACCTGAGCCT 130391 Query 145218 TTAGCGTACCCCAATCCCATAG---CGAAGTCGGCCTCACGTCCCACATGTCGTACTGCA 145274 | | || ||| ||||| | ||| | ||| |||| |||||||||| |||| | Sbjct 130392 TCAACGCGTTCCAGTCCCACATGCCCGACGATGGCGTCACACCCCACATGTCRAACTGGA 130451 Query 145275 AAATGCCCTCGCTGGCGGGGCTGCCTTGAAAGGAACTGTAACTGCCCCAAG--TTTTGGC 145332 | ||||||| ||| | || ||| || | ||| || || | || Sbjct 130452 AGATGCCCTTGCTCACTGGYGAGCCAGCRAACGTCTCGTA--TGGACCRTKSACCTYAGC 130509 Query 145333 GAGCTCGCAAC-TCGCCTCCAGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGA 145391 | ||| || | |||||||| || || || || | |||||| || ||| |||| | Sbjct 130510 YAACTC-CATCGACGCCTCCATCGCACCAAAGTACAGCGTCTCGAAGATGTGCTTGTTCA 130568 Query 145392 GCAGCATCGCTTCATCGCTCTCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCC 145451 | || || || || ||| ||| | || ||| | || | ||||||||| | Sbjct 130569 ACTCGCGAGCCTCGTCACTTTCGAACGCGTAGTTCATCAGGATGAACGTATCGGCGAGAC 130628 Query 145452 CCTGTATTCCCACGCCGATGGGCCGATGTTTCATGTTGCTCATCCTCGCCGACTCG-ATA 145510 |||| | || | || || || || || |||||||||| || | ||| || | || Sbjct 130629 CCTGCACACCGATACCAATAGGACGGTGGCGCATGTTGCTCTTCTTGGCC-TCTGGAATC 130687 Query 145511 GGATATCGATTACGGTCGATAATTTTATTCAAGT--TTCG-CACT------ACTACCTTT 145561 || || || |||||| | || |||| || |||| |||| ||||| || Sbjct 130688 GGGTAGTAGTTGATGTCGATGACCTTGTTCAGGTTCTTCGTCACTTGTTTGGCTACC-TT 130746 Query 145562 GTAATGTGCCGCAACTTTTCAAAGTCAAACCGAGCCTCGTCAACGACCACACAGCTATTG 145621 ||| | ||| || || ||| || | || ||| || | || | | Sbjct 130747 GTA--------GAGCTTCTCGAAATCATACTTGCCGTCCTCACTCACGA-ACTTCGGT-- 130795 Query 145622 ACGGCGATCGACGCCAAATTACAAACTGCCGTCTCCTCGGCGTCGCTGTATTGTACGATC 145681 | |||||||||||| | || || || || ||| || | || |||| | | | | Sbjct 130796 AGGGCGATCGACGCAAGGTTGCACACAGCGACCTCATCCGAATCTGTGTACTCGATCACC 130855 Query 145682 TCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTG 145741 || |||||| ||||| | ||| || || || || ||||| || || | || Sbjct 130856 TCACAGCACAAGTTGCTCGAGCGGATCGTACCGAGGTTCTGCTGGTTCGACTTGCGATTC 130915 Query 145742 CACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGAT---A 145798 ||| |||||||| ||||| ||||| || ||||| | ||| | ||| | ||| Sbjct 130916 GCCGCATCCTTGTACAGCATATACGGCGTACCCGTCTCGATCTGTGACTCGAGGATGGCG 130975 Query 145799 AAACGGTGCAAGTCCTGCGCACGCACCTGCTGCTGGTAGC--GGCCCTCTTCTTCGTATT 145856 || | | || | ||| ||||| | || | || ||| ||||| |||| || | Sbjct 130976 AACCAGAGC---TGCTGAGCACGGA--TGGTCTTGCGAGCCTTTCCCTCAGCTTCATACT 131030 Query 145857 TCCTGTAGAGCTCCTCAAACGCGGAACCGTAGCAATCGGACAGGCCGGGACACTTGTTGG 145916 | ||| | | ||| ||| | || |||| ||| | || || || | ||| | Sbjct 131031 TGGCGTACAACGTCTCGAACTCCTCGCCCCAGCACTCGTAGAGACCTTGAGCTTCGTTTG 131090 Query 145917 GACACATCAGCGACCATACGCCGTTGGCGTTGACGCGCTCCATAAACAAATCTGGCACCC 145976 | || | || |||| | ||||| || | || |||| ||| ||||||||||| | || Sbjct 131091 GGCAGAACAAACTCCATTCACCGTTCGCCTCCACACGCTTCATGAACAAATCTGGGATCC 131150 Query 145977 ACAGCGCGTACATCAAGT--CGCGCGCTTTGCAATCCTCAGCACCCATGTTTCGCTTCAA 146034 ||| | |||| | | || || || | || | |||| ||| ||| |||||| Sbjct 131151 ACAACCCGTAAAAGAGGTCACGAGCACGATGGA--GCTCATTACCGTGGTTCTTCTTCAA 131208 Query 146035 AT-TAAGCACACTATAGATGTCCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTT 146093 | ||| || | | |||||||||||||||| || || | |||| ||||| | || | Sbjct 131209 GTCCAAGAACTCGA-AGATGTCCGCGTGCCATGGCTCCAAGTAGATGGCGAACGAACCCT 131267 Query 146094 TTCGTTTG---CCACCCTGGTCCACGTGACGTACCATGTTGTTAAAGACGCGCACCATGG 146150 | || ||| || |||||||| |||| || || ||| ||| || || |||| ||| | Sbjct 131268 TGCGCTTGCCTCCGCCCTGGTCAACGTAGCGAGCCGTGTCGTTGAACACACGCAACATTG 131327 Query 146151 GCTCGACGCCGCTGGCTACG--CCGTTCGTA----GAGTTTATTCTGGTGCCGCGGGAGC 146204 | ||| || | | ||| ||||||||| || | || ||| | | || | | Sbjct 131328 GAACGAGACCATT--CGACGATCCGTTCGTACCGCGAATGTA-ACTGTT--AGTGGCA-C 131381 Query 146205 GCACGCAATGAACATTCACGCCGAGACCGCCGCCGTACTTGGATATAGCGGCGCAGTCGC 146264 | | | || | | | | |||| || ||| | ||||||| |||| ||||||| Sbjct 131382 GGATGTTGTGCATACTGATACCGATGCCACCGGCCCACTTGGAGATAGATGCGCAGTTCT 131441 Query 146265 CGAGCGTCTCGTAGATGCCGTCAATG 146290 |||||| |||||||| || |||||| Sbjct 131442 TGAGCGTGTCGTAGATACCCTCAATG 131467 >seq296 Length=213998 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| ||||| || || | |||||||||||| || |||||||| || Sbjct 98302 CCACCACGAAGACGGAGCACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCCGAG 98361 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| ||| |||| | |||||||||||| || || Sbjct 98362 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGTGGA 98421 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||| ||||| ||| |||||||||| | || | | || | | ||||| Sbjct 98422 ATTCCTTCCTTGTCCTGGATCTTCTGCTTGACGTTGTCAATGCTGTCCGATGGCTCGACA 98481 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | ||| || || || ||||| || || || |||||||| Sbjct 98482 TCGAGCGTGATGGTCTTGCCCGTCAGAGTCTTCACAAAGATCTGCAT 98528 >seq47 Length=722260 Score = 96.9 bits (106), Expect = 3e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || ||||| || || | |||||||||||| || |||||||| || | Sbjct 455343 CCACCACGAAGGCGGAGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAC 455402 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| |||||||| || ||| |||| | ||||||||| || ||||| Sbjct 455403 AAGGTGCGGCCATCCTCAAGCTGCTTACCAGCGAAGATCAGACGCTGCTGATCTGGAGGA 455462 Query 131128 ATTCCT 131133 |||||| Sbjct 455463 ATTCCT 455468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472010793945600