Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F002073175.1_202017-03-28] 340 sequences; 36,794,057 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq1 111 2e-19 >seq1 Length=1427593 Score = 111 bits (122), Expect = 2e-19 Identities = 403/620 (65%), Gaps = 18/620 (3%) Strand=Plus/Plus Query 93080 TTGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCG--TGATATCAACTCAT 93137 ||||| | ||||| || ||||| || | ||||||||| || ||||| | ||| | Sbjct 982066 TTGTAGAGCAAGCAGGCGAAGTCACAGTGGAGACCTTCGTCACGACTGATA--AGCTCGT 982123 Query 93138 TGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAAC 93197 | ||| | | || || | || || || ||||||||||| || | || ||| ||| Sbjct 982124 TCGAGAAGCTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAGACCGA-GCAGAAC 982182 Query 93198 TA-CCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTT 93256 | || || || || ||||| || | ||| || || || || | ||| || ||||| Sbjct 982183 GAACCCGAGAAGAAGATACCCTCAATGGCAGCGAAGGCGACGACACGCTCAGCAAAC--- 982239 Query 93257 GCGGAATTACTGCTGAT-----CCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAG 93311 |||| || || |||| ||| | ||||| | ||| || |||| | || | Sbjct 982240 GCGGCGTT-CT-CTGAGTCACACCAGCGGAGCGCCCAGTTGGCCTTCTTCTGCACGCATG 982297 Query 93312 GTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTAT 93371 | | ||| || || ||| || | || | |||| | | ||| ||||| || | Sbjct 982298 GGATTGTCTCAATGGCGCGGAACAAGTGGTTCTTCTCGGCGGCATCCTTGATGTACGTGT 982357 Query 93372 CGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGA 93431 | || ||||| || |||||||| | |||| ||||| || ||||| ||||| ||||||| Sbjct 982358 CAATCAACAGCGAGTACATTTCCGGGTGGATGTTCTCAATGGCAATCTGGAAGCCGTAGA 982417 Query 93432 AACATCTAGCTTCCGTGATCTGCACTTC-TTGAGAAAATCTCTCTACGAGATTTTCATTG 93490 | || | ||||| | | ||| ||||| ||| || | || | || || || || Sbjct 982418 AGCAGCGGGCTTCAGGCACCTGGACTTCGTTGCTGAAGT-TCATGGCAAGGTTCTCGTTC 982476 Query 93491 ACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCA 93550 || |||||||| || || || || || | | ||||| || || || ||||| Sbjct 982477 ACAATACCATCACTGGCAGCGAAGAACGCGAGCACGTGCTTGATGAAGTGACGCTCATTG 982536 Query 93551 TCTTTAAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAA 93610 || | | || |||| || || || | |||||||| || ||||| ||||| Sbjct 982537 TCGGTCATGTTGCCCCAGTCCTTGAGGTCGTGCACAAGATCGATCTCCTCGACCGTCCAG 982596 Query 93611 AACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATG 93670 || ||||| || || |||||||||||||| || || | | || || || || | Sbjct 982597 AAGCTGGCTTCCGCCTTCTTGTACATATCCCAGATCTCCTTCTCCTGGATCGGGAAGAGC 982656 Query 93671 ACAAAACGATTAGGGTTATC 93690 || || || || ||||| || Sbjct 982657 ACGAATCGGTTTGGGTTCTC 982676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556858433341600