Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F002073175.1_202017-03-28] 340 sequences; 36,794,057 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq1 147 4e-30 seq69 145 2e-29 seq91 132 1e-25 seq308 87.8 4e-12 >seq1 Length=1427593 Score = 147 bits (162), Expect = 4e-30 Identities = 358/536 (67%), Gaps = 10/536 (2%) Strand=Plus/Plus Query 251844 GTGCAGACCCTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCC 251903 ||| ||||| ||||| |||||||| | |||||| || | | ||||||||||| | || Sbjct 982092 GTGGAGACCTTCGTCACGACTGATAAGCTCGTTCGAGAAGCTGAGGCCAGGCATGAGACC 982151 Query 251904 ACGGTTCCTGAGCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACA 251963 ||| ||| |||||||||||| | ||| || || || ||||| | | |||||| | Sbjct 982152 ACGCTTCTTGAGCCAGAAGACCGAGCAGAACGAACCCGAGAAGAAGATACCCTCAATGGC 982211 Query 251964 CACCCATGCAACAAGGCGCTCAGCAAACGACTTGTCCTGCGACA-AGAACTTCTGTGC-- 252020 | | || || | ||||||||||||| || || || | | | | | || Sbjct 982212 AGCGAAGGCGACGACACGCTCAGCAAACGCGGCGTTCTCTGAGTCACACCAGCGGAGCGC 982271 Query 252021 CCATGCTGCCTTCTT-TCCAACCGCG-GGGATTGTTTCGATTGCATCAAAGAGAGAGTTC 252078 ||| |||||||| | || ||| |||||||| || || || || | |||| Sbjct 982272 CCAGTTGGCCTTCTTCTGCA--CGCATGGGATTGTCTCAATGGCGCGGAACAAGTGGTTC 982329 Query 252079 CGCTCGGCATCGTCCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATG 252138 |||||| | |||| |||| || |||| || || |||||||| |||| |||||| Sbjct 982330 TTCTCGGCGGCATCCTTGATGTACGTGTCAATCAACAGCGAGTACATTTCCGGGTGGATG 982389 Query 252139 GATTCGTTGAACATCTGGTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCCGTG 252198 || || |||||| | | ||||| || || ||| | |||||| || Sbjct 982390 TTCTCAATGGCAATCTGGAAGCCGTAGAAGCAGCGGGCTTCAGGCACCTGGACTTCGTTG 982449 Query 252199 GAAAAGTTGTTTGCAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGA 252258 ||||| | |||| |||||| |||| || ||||| ||| | || ||||| | || Sbjct 982450 CTGAAGTTCATGGCAAGGTTCTCGTTCACAATACCATCACTGGCAGCGAAGAACGCGAGC 982509 Query 252259 ATGGTCTTGATGAAGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCC 252318 | | |||||||||||||||||||| |||| | | ||| | |||||| | ||| Sbjct 982510 ACGTGCTTGATGAAGTGACGCTCATTGTCGGT---CATGTTGCCCCAGTCCTTGAGGTCG 982566 Query 252319 TGATTCAGAGGAACTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACAT 252374 || ||| | || || ||||||||||| ||| |||||||||||||||| Sbjct 982567 TGCACAAGATCGATCTCCTCGACCGTCCAGAAGCTGGCTTCCGCCTTCTTGTACAT 982622 >seq69 Length=689117 Score = 145 bits (160), Expect = 2e-29 Identities = 659/1024 (64%), Gaps = 43/1024 (4%) Strand=Plus/Minus Query 279351 GATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAACTCTACC 279410 ||||| ||| ||||||| ||||||||||| || ||||| | ||| |||| ||| | Sbjct 384222 GATCTCTGTAACTGTGAGTTCTCGCTCGCTTACGGTGGTATGATCTTGCTCAACAACGCT 384163 Query 279411 CGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCGGGTAAG 279470 || || |||||||||| |||| || |||||| ||||| || || |||||| Sbjct 384162 CGTCTTCGTCTCAAGCGTGGTCACCGTTACGGTCTCTGTGGTCCAAACGGTTGTGGTAAG 384103 Query 279471 AGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCATC-TGA 279529 || || ||||| ||||| | || |||||||| || || || || || ||| ||| Sbjct 384102 TCGACGCTCATGCGTGCCATCTCGAAGGGTCAGCTCGAGGGCTTCCCAAA-GCAGGATGA 384044 Query 279530 GGTAAGGACAGTGTATGTAGAGCACGACATCGACTCCTCTCTCTCGGATAGCACTGTGTT 279589 | | | ||| |||| || |||||| || || | || | ||| |||| | Sbjct 384043 GCTCAAGACCGTGTTCGTTGAGCACAACCTCCAGGCCGAGGAAGCCGATCTTCCTGTCCT 383984 Query 279590 CGACTTCCTAACGTCTGACAATCAGGTTATGGAAATCAGCTCTCC--TGAGGAAATCATC 279647 ||||||| | | ||| | | | | || || |||| | ||| ||| || Sbjct 383983 CGACTTCATGTTCTGTGA---TGACGCCCTC-AAGTC-GCTCCCACGTGAAGAAGTCCGT 383929 Query 279648 CAGAAACTGGAGGCCAATGGTTTTGATGAAAGAATGCGTAATCTGCCAGTAGGTTCTCTG 279707 ||| || | | ||||| || |||| ||| ||||| ||| |||| Sbjct 383928 GAGATGCTCTCGAGCGTCGGTTTCACCGACGAGATGCAGGCTCTTCCAGTCGGTGCTCTT 383869 Query 279708 TCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGATGTC 279767 ||||||||||||||||||||||| | | |||| ||||| | || || ||| || Sbjct 383868 TCGGGTGGTTGGAAGATGAAGCTCGAATTGGCTCGTGCCATGTTGATGAAGGCTGATATC 383809 Query 279768 CTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAGTGTCC 279827 | |||| ||||| || || |||||| |||| || ||||| |||||| | | | | Sbjct 383808 TTGTTGCTCGATGAACCTACGAACCACTTGGATGTCAAGAACGTCGCCTGGTTGGAGAAC 383749 Query 279828 TACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGCTTCCTA 279887 ||| | | ||| || | || || | || |||| || || |||||||| || ||| | Sbjct 383748 TACTTGAACAGCCTCACCAACGTGACCTCGATCATGGTGTCGCACGACTCGGGTTTCTTG 383689 Query 279888 GATGCCGTGTGCTCTGCCATCATTCACTATGAGCAA---AATCTGAAGCTCTCCAAGCAC 279944 || |||||| | |||||| ||||| ||| | || || ||| ||| |||| Sbjct 383688 GACAACGTGTGTACCAACATCATCCACTACGAGAACCGTAAGCTCAAGATCTACAAG--- 383632 Query 279945 ATCGGCAACCTGTCTGCTTTCGT---GGCAAAGCGCCCTGAGGCGGCCGCCTACTATGAC 280001 || ||||| || ||||| || |||| | ||||| ||||||| || Sbjct 383631 ---GGTAACCTCTCGAAGTTCGTCGAGGTCAAGC---CAGAGGCCAAGACCTACTACGAG 383578 Query 280002 CTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAGGGCATCAC- 280060 || ||| || | ||||| ||||||||||| || || ||| | |||| Sbjct 383577 TTGGAGGCTGCTGCTTTCAAGTTCACCTTCCCTGAGCCTGGTTTCTTGGCTGATATCAAG 383518 Query 280061 ATCAAAGGATCGCGCAATCATGAAGCTCCGTGGCG---TCTCCTTTGCTTATCCCAA-TG 280116 | ||| || || | ||||| | | || || | | | | | |||| | Sbjct 383517 AACAAGGGTAAGC-CGATCATTC-GTT---TGACGAACTGTTCGTACCAGTACCCAGGTC 383463 Query 280117 GCCCCAA--CATCT-TCAGCAGTGTCAACTCG--CAGGT-TTCTATGAACTCACGGATTG 280170 | ||| |||| ||||| || || ||| || | ||| | ||| || |||| Sbjct 383462 GTGACAAGCCATCGATCAGCGGTATC---TCGGTCACCTGTTCGCTTGCCTCCCGTATTG 383406 Query 280171 GTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGA 280230 || | || || || ||||| |||||||| ||| | ||||| | ||||||| || Sbjct 383405 CCGTTCTCGGTCCAAACGGTGCTGGTAAGTCGACCATGATCAAGATGTTGACTGGTGAAG 383346 Query 280231 CCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTC 280290 | || | || ||| | || |||||||| || | | || | ||||||||||| | Sbjct 383345 TCGAGCCAACGTCGGGTACTGTGTGGAAGCACCCTGCCCTTCGTTTCGCTTACGTCGCCC 383286 Query 280291 AGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGT 280350 ||||||||||||||||||| || | ||| ||||||| | | ||||| ||||| |||| Sbjct 383285 AGCACGCTTTCCACCACATTGAAGAGCACTTGGACATCTCGGCCAACCAGTACATCCAGT 383226 Query 280351 GGCG 280354 |||| Sbjct 383225 GGCG 383222 >seq91 Length=645019 Score = 132 bits (146), Expect = 1e-25 Identities = 216/306 (71%), Gaps = 4/306 (1%) Strand=Plus/Plus Query 218528 ACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCCCAGCGTGGTGG 218587 ||||||| |||||||| ||||| | || ||| || || || ||||| || | Sbjct 327464 ACAAGGAACTCATTCTATTCTCTAGAGCAGACAACTTGCGATCGATCCCAAGCGTTGTCG 327523 Query 218588 ATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTT-TGCCGCATTCAAGCGGAACCTGGTT 218646 |||| | |||||||| || |||||| | ||||| || | | ||| || |||||| Sbjct 327524 ATGGTTTTAAGCCATCTCAACGTAAGGTGCTCTTCTGTTGTCT-CAAACGAAACCTGAAG 327582 Query 218647 CAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCAC 218706 ||||| |||||||| || || || || || || || ||| | ||||||||| Sbjct 327583 ACGGAAATCAAGGTCGCCCAACTTGGAGGATACGTCTCGGAGCATTCGGCTTACCATCAC 327642 Query 218707 GGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCAGTAAC 218766 |||||| ||| | | ||| | ||||| |||||| || |||| |||||||| ||| Sbjct 327643 GGTGAGGCAAGTATATACGGTACAATTGTCAACATGGCGCAAGACTTCGTGGGCAGCAAC 327702 Query 218767 AACATGAACTTGCTGCTC-CCCAACGGTCAGTTTGGTTCTCGTCTATTGGGTGGAAAGGA 218825 ||||| || ||||| ||| || ||||||||||| ||| | || | |||| || ||||| Sbjct 327703 AACATCAATTTGCT-CTCGCCAAACGGTCAGTTCGGTACGCGATTGATGGGAGGCAAGGA 327761 Query 218826 TAGTGC 218831 ||||| Sbjct 327762 CAGTGC 327767 >seq308 Length=1002524 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||||||||||||||| | || |||| | |||||||||||||||||| Sbjct 427457 AGCCCGTCTAGCTCAGTCGGTAGAGCGCTGGCCTTTTAAGCCAGTGGTCGTGGGTTCGAG 427516 Query 142563 CCCCAC 142568 |||||| Sbjct 427517 CCCCAC 427522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027832322485940