Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F002073175.1_202017-03-28] 340 sequences; 36,794,057 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq296 125 2e-23 seq235 84.2 5e-11 >seq296 Length=213998 Score = 125 bits (138), Expect = 2e-23 Identities = 145/194 (75%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | ||||||||| ||||| || | || || || |||||| Sbjct 98338 TCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAG 98397 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||||||| || ||| |||||||| || |||||||| ||| || ||||| Sbjct 98398 ATCAGACGCTGCTGGTCTGGTGGAATTCCTTCCTTGTCCTGGATCTTCTGCTTGACGTTG 98457 Query 288403 TCTATAGAATCGCTCGAT---TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || |||| || || ||||||||||| ||||| || ||||||||||| Sbjct 98458 TCAATGCTGTC---CGATGGCTCGACATCGAGCGTGATGGTCTTGCCCGTCAGAGTCTTC 98514 Query 288460 ACGAATATCTGCAT 288473 || || |||||||| Sbjct 98515 ACAAAGATCTGCAT 98528 >seq235 Length=453453 Score = 84.2 bits (92), Expect = 5e-11 Identities = 122/171 (71%), Gaps = 6/171 (4%) Strand=Plus/Plus Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 ||| || || ||||| || | || || || || ||||||| ||||| ||| ||||| Sbjct 11166 GAGGGTACGGCCGTCCTCGAGCTGCTTACCAGCAAAGATCAATCGCTGCTGA---TCTGG 11222 Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 || ||||| || |||||||| ||| || ||||| || || || || | || Sbjct 11223 AGGAATGCCTTCCTTGTCCTGGATCTTCTGCTTGACGTTGTCAATCGAGTCCGAAGGCTC 11282 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || | ||| || ||||| ||||| || ||||||||||| |||||||| Sbjct 11283 GACGTCCAACGTAATGGTCTTGCCGGTGAGTGTCTTGACGAAGATCTGCAT 11333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179649261130520