Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F002073175.1_202017-03-28] 340 sequences; 36,794,057 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq1 118 2e-21 seq69 89.7 1e-12 seq25 84.2 5e-11 >seq1 Length=1427593 Score = 118 bits (130), Expect = 2e-21 Identities = 561/880 (64%), Gaps = 40/880 (5%) Strand=Plus/Minus Query 242875 TTCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAACCTTTTGG 242934 ||||| |||||| | ||| || ||||||||||| |||||||| | || | ||| ||| Sbjct 982652 TTCCCGATCCAGGAGAAGGAGATCTGGGATATGTACAAGAAGGCGGAAGCCAGCTTCTGG 982593 Query 242935 ACCACCGAGGAAGT---TCCTCTGAACGCAGACGTCGTCGACTGGCGCGAGAAACTCAAT 242991 || |||||| | || | || ||| || || |||||| || | | | | Sbjct 982592 ACGGTCGAGGAGATCGATCTTGTGCACG---ACCTCAAGGACTGGGGCAACA---TGACC 982539 Query 242992 GACGACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTCCGATGGTATT 243051 ||| | || ||||| |||||||| ||| | || | || ||||| | | ||||||||| Sbjct 982538 GACAATGAGCGTCACTTCATCAAGCACGTGCTCGCGTTCTTCGCTGCCAGTGATGGTATT 982479 Query 243052 GTGATGGAAAATCTGCAGACCAACTTTAGTGTGGAAGTAACGGTTCCAGAGGCACGGCAA 243111 |||| || || || | ||||| || ||||| ||| || || || || Sbjct 982478 GTGAACGAGAACCTTGCCATGAACTTCAGCAACGAAGTCCAGGTGCCTGAAGCCCGCTGC 982419 Query 243112 TTTTATGCTTACCAAA----CATTCAACGAATCTATCCATTCTGAACAATATGCTCTTCT 243167 || || | | ||| | |||| | ||| ||||| | ||| || | || | Sbjct 982418 TTCTACGGCTTCCAGATTGCCATTGA--GAAC--ATCCACCCGGAAATGTACTCGCTGTT 982363 Query 243168 TATCGACGCGCTTATTTCA--GATGAACAAGAGCGAAACGAGCTTTTCGACGCCATCGAA 243225 || ||| || || ||| |||| ||| ||| | | ||| |||||| || Sbjct 982362 GATTGACACG--TACATCAAGGATGCCGCCGAGAAGAACCACTTGTTCCGCGCCATTGAG 982305 Query 243226 AACATTCCGGCGGTTCATAACAAGGCAAAATGGGCTCA-----GAAGTGGCT---AGAAC 243277 | || || || || || ||||| || ||||| | | ||| || ||||| Sbjct 982304 ACAATCCCATGCGTGCAGAAGAAGGCCAACTGGGCGCTCCGCTGGTGTGACTCAGAGAAC 982245 Query 243278 CCGGTAAATCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTT 243337 | | | |||||||||||| ||||||||| | | |||| ||||| | || | Sbjct 982244 GCCG-----CGTTTGCTGAGCGTGTCGTCGCCTTCGCTGCCATTGAGGGTATCTTCTTCT 982190 Query 243338 CCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTC 243397 | || |||||| | |||| ||||| ||| ||| | |||||||||||| | Sbjct 982189 CGGGTTCGTTCTGCTCGGTCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGCCTCAGCT 982130 Query 243398 TGTCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTA-TG 243456 | || |||||| | |||||||| ||||| || || ||| | |||| |||| | Sbjct 982129 TCTCGAACGAGCTTATCAGTCGTGACGAAGGTCTCCACTGTGACTTCGCCT-GCTTGCTC 982071 Query 243457 TATTCAAAGCTCCAGAACAAGCTACCAT--TCGAAACGGTCAAACAAATCATCACAGAAG 243514 || ||||| ||| || ||| ||| | || | | || ||| || | Sbjct 982070 TACAACAAGCTTGTCAACCGTCTCCCAGAGTCGCGAA--TCCACGAGATTGTCAGTGATG 982013 Query 243515 CAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGA 243574 | || | ||| ||||| ||| | ||| | | ||| | |||||| || |||| Sbjct 982012 CCGTCACGATCGAGAAGGAGTTCGTCAAGGACTCGCTCCCAGTCGAGCTTATCGGTATGA 981953 Query 243575 ACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTG 243634 |||| | |||||| | ||||||||||| ||||| || || || || || ||| |||| Sbjct 981952 ACTCGGCGCTCATGTGCCAGTACATCGAGTTCGTCGCTGATCGTCTTCTCCACGCTCTTG 981893 Query 243635 GTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTC 243694 || ||| | |||||| | ||||| |||| || ||||| | || ||||| | Sbjct 981892 GTGTCTCGAAGATCTACAACGCGTCTAACCCATTTGACTGGATGGATATGATCTCGCTCC 981833 Query 243695 AAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTA 243734 | || || || ||||||||||| |||||||| |||| || Sbjct 981832 AGGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGTGAATA 981793 >seq69 Length=689117 Score = 89.7 bits (98), Expect = 1e-12 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 333315 TCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGA 333374 || ||||| |||||||| ||||||| ||||| |||||||||| | ||||| | Sbjct 383198 TCCTTGTCCTCACCGGACTGGAAACGCCACTGGATGTACTGGTTGGCCGAGATGTCCAAG 383257 Query 333375 TGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGC 333434 || || || |||||||||||||| ||||| || |||||||| | ||| | || ||| Sbjct 383258 TGCTCTTCAATGTGGTGGAAAGCGTGCTGGGCGACGTAAGCGAAACGAAGGGCAGGGTGC 383317 Query 333435 TTCCAAACA 333443 ||||| ||| Sbjct 383318 TTCCACACA 383326 >seq25 Length=728326 Score = 84.2 bits (92), Expect = 5e-11 Identities = 223/338 (66%), Gaps = 6/338 (2%) Strand=Plus/Minus Query 297437 GTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGG 297496 ||||| || || || | |||||| ||||||||||||||| | || || |||||| || Sbjct 453475 GTGAAGATGTAACGAGGACTCGCAGCATCCTTACCACCCTGAAGTCGCGTACCGAATTGA 453416 Query 297497 CCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACG 297556 ||| || | | | | | ||| || || || || ||||| || | ||||| Sbjct 453415 CCCGAAGGGTAGAGCAATGGCAAGTTGTTCGCACCAACGTAGTCCTGCGCCATATTCACA 453356 Query 297557 ATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACCG 297616 || || || || |||||||| || ||||| || || ||||||| | |||||| Sbjct 453355 ATTGTTGAGTGAAGTGATGCTTCACCGTGGTGGTATGCCGTATGCTCACTACAGTAACCC 453296 Query 297617 CTGAACTGTGCAACCTTCACGTCGGTCGTCAAATTGCGCTTGA---AAGCTGAATATATC 297673 || ||| || ||||| || || |||| | || |||| || |||| || | | | Sbjct 453295 GCGAGCTGCGCCACCTTGACTTCCTTCGTGAGTTTTCGCTCGAGACAAGC-GA--ACAAC 453239 Query 297674 ACTTTCCGTTGAGAAGGTTTGAAACCATCAACGACCGACGGAATGCTTCGTTCCAGATCG 297733 || || || || || |||| |||||||| || || |||| ||| | ||| Sbjct 453238 ACCTTACGCTGTGATACCTTGAGACCATCAATAACGGATGGAAGCGATCGAGCATTGTCG 453179 Query 297734 TACCGCGAGAACAAAATAAGTTCCTTGTCGATGAAGTC 297771 |||||||| || || ||||||| || |||||| Sbjct 453178 GCATGCGAGAACTGGATCAGCTCCTTGTTGACGAAGTC 453141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102875195579000