Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F002073175.1_202017-03-28] 340 sequences; 36,794,057 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq296 136 4e-27 seq235 86.0 7e-12 >seq296 Length=213998 Score = 136 bits (150), Expect = 4e-27 Identities = 168/226 (74%), Gaps = 8/226 (4%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | |||||| ||||| || |||||| || || ||||| || | || || || | Sbjct 98313 ACGGAGCACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCC 98372 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || |||||||| || ||||| || || ||||||||||| | ||| | | ||||| Sbjct 98373 GTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGTGGAATTCCTTCCTT 98432 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCG-TGTCGCTCGAT---TCCACATCGACCG 42168 |||| ||| || || |||| ||| | || | |||| |||| || ||||||| || Sbjct 98433 GTCCTGGATCTTCTGCTTGA-CGTTGTCAATGCTGTC---CGATGGCTCGACATCGAGCG 98488 Query 42169 TGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTCAC 42214 ||||||| |||||||| || ||||| |||||||| ||||| || || Sbjct 98489 TGATGGTCTTGCCCGTCAGAGTCTTCACAAAGATCTGCATCTTTAC 98534 >seq235 Length=453453 Score = 86.0 bits (94), Expect = 7e-12 Identities = 117/161 (73%), Gaps = 2/161 (1%) Strand=Plus/Plus Query 42052 CGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCT 42111 |||| || |||||||||||||| || || | ||||||||| || | || | || |||| Sbjct 11177 CGTCCTCGAGCTGCTTACCAGCAAAGATCAATCGCTGCTGATCTGGAGGAATGCCTTCCT 11236 Query 42112 TGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTG 42170 ||||| ||| || || |||| ||| | | | || ||| | || || || | ||| Sbjct 11237 TGTCCTGGATCTTCTGCTTGA-CGTTGTCAATCGAGTCCGAAGGCTCGACGTCCAACGTA 11295 Query 42171 ATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 ||||| ||||| || || ||||| || ||||| ||||| || Sbjct 11296 ATGGTCTTGCCGGTGAGTGTCTTGACGAAGATCTGCATCTT 11336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543210491345600