Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F002073175.1_202017-03-28] 340 sequences; 36,794,057 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq14 329 3e-85 >seq14 Length=753269 Score = 329 bits (364), Expect = 3e-85 Identities = 879/1340 (66%), Gaps = 30/1340 (2%) Strand=Plus/Minus Query 93898 CCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATGACG 93957 || || || |||||| |||| || || || ||| |||| ||||||||| || | | Sbjct 131541 CCAACTCTTTTCAACTCGGGTACGCCACGCCCTCAGTTGTCGTCGTGTTTCTTGCTTGCC 131482 Query 93958 AACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCA 94017 | |||| |||||||| || || | ||||| |||||| |||| || | ||||| Sbjct 131481 ATGAAGGATGACTCCATTGAGGGTATCTACGACACGCTCAAGAACTGCGCATCTATCTCC 131422 Query 94018 AAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATC 94077 || | || || || ||||| |||||| | ||| || | ||||||| ||||| Sbjct 131421 AAGTGGGCCGGTGGCATCGGTATCAGTATGCACAACATCCGTGCCACTAACAGTTACATT 131362 Query 94078 CGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCG 94137 |||||||| || || | || || || ||||| || ||| | || || |||||| || || Sbjct 131361 CGCGGTACGAACGGATCGTCGAATGGTCTCGTTCCAATGTTGCGTGTGTTCAACGACACG 131302 Query 94138 GCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAG 94197 || |||||||| |||||||| || || | | | |||||||| ||||| |||| | ||| Sbjct 131301 GCTCGCTACGTTGACCAGGGCGGAGGCAAGCGCAAGGGTTCGTTCGCCATCTACTTGGAG 131242 Query 94198 CCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTG 94257 || |||||||||||| | | ||| | ||| || ||||||||||| || || || Sbjct 131241 CCATGGCACGCGGACATCTTCGAGTTCTTGGACTTGAAGAAGAACCACGGTAATGAGCTC 131182 Query 94258 GAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTC 94317 | | || | |||||||| |||| | ||| | ||||| | || ||||| || || Sbjct 131181 CATCGTGCTCGTGACCTCTTTTACGGGTTGTGGATCCCAGATTTGTTCATGAAGCGTGTG 131122 Query 94318 GAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGACGTT 94377 ||| ||| | |||||| | || || || || ||| || || || | ||| Sbjct 131121 GAGGCGAACGGTGAATGGAGTTTGTTCTGCCCAAACGAAGCTCAAGGTCTCTACGAGTGC 131062 Query 94378 TGTGGATCGCGTTTTGAAGAC-TTGTATGCTCGTTACGAATCGCAGGGCAAGGCCAGGAA 94436 || || | | || |||| ||||| || || ||| | |||| ||||| | || Sbjct 131061 TGGGGCGAG-GAGTTCGAGACGTTGTACGCCAAGTATGAAGCTGAGGGAAAGGCTCGCAA 131003 Query 94437 GGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGGTAC 94496 | || |||| | |||| ||| ||| | || |||| | ||||||||||| Sbjct 131002 GACCATCCGTGCTCAGCAGCTCTGGTTCGCCATCCTCGAGTCACAGATCGAGACGGGTAC 130943 Query 94497 GCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGGGGT 94556 ||| || || ||| |||||| | | || |||||| ||||||||| ||||||| Sbjct 130942 GCCGTATATGCTGTACAAGGATGCGGCGAATCGCAAGTCGAACCAGCAGAACCTCGGTAC 130883 Query 94557 GATCAAGAGCTCG---AATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGAT 94613 |||| ||||| || ||||| ||| | ||||||| || | |||| ||| | Sbjct 130882 GATC---CGCTCGAGCAACTTGTGCTGTGAGGTGATCGAGTACACAGATTCGGATGAGGT 130826 Query 94614 TGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTACACGTC 94673 |||||||| ||||| | || ||| ||| | | |||||| | || | ||| | Sbjct 130825 CGCTGTGTGCAACCTTGCGTCGATCGCCCTACCGAAGTTCGTGAGTGAGG-----ACGGC 130771 Query 94674 TACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATGGTCTTGAACCT 94733 | || ||| | ||| |||| || | || | || |||||| Sbjct 130770 AA-------GTATGATTTCGAGAAGCTCTACAAGGTAGCCAAACAAGTGACGAAGAACCT 130718 Query 94734 GAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAACCTGAA 94793 ||||| ||| ||||||| |||| |||||| | || ||||| |||| ||| || Sbjct 130717 GAACAAGGTCATCGACATCAACTACTACCCGATTCCAGAGGCCAAGAAGAGCAACATGCG 130658 Query 94794 GCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGATGCGTCT 94853 || || || || || ||||| || |||||| |||| || || | | ||||| || Sbjct 130657 CCACCGTCCTATTGGTATCGGTGTGCAGGGTCTCGCCGATACGTTCATCCTGATG-AACT 130599 Query 94854 GC-CCTACGACTCTGTCGACGC-GGCGGGTTTGAATTTGAACATATTCGAAAGCATTTAT 94911 | | | ||| || ||| || ||| | ||||| | |||| ||||| | | || Sbjct 130598 ACGCGTTCGAAAGTGACGAGGCTCGCGAG-TTGAACAAGCACATCTTCGAGACGCTGTAC 130540 Query 94912 TACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCCACACGAATCG 94971 | || || ||| | || | | || || || || ||| |||| || Sbjct 130539 TTTGGTGCGATGGAGGCGTCGATGGAGTTRGCTR---AGGTSMAYGGTCCATACGAGACG 130483 Query 94972 TTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTGTGAAGC-- 95029 || || || || || ||||||| || ||||| ||| | |||||||||| || Sbjct 130482 TTYGCTGGCTCRCCAGTGAGCAAGGGCATCTTCCAGTTYGACATGTGGGGTGTGACGCCA 130423 Query 95030 -CCTCGGGTCTGTACGACTGGGAAGCTCTACGCGCTGATGTTATCAAACACGGTGTGAAA 95088 | ||||| ||| |||||| | || | ||| | || || | ||||||||| Sbjct 130422 TCGTCGGGCATGTGGGACTGGAACGCGTTGAAGGCTCAGGTGATGGAGCACGGTGTGCGC 130363 Query 95089 AACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAAC 95148 ||| || || | |||| || ||||| || || || ||||| |||||||| || |||||| Sbjct 130362 AACTCGTTGTTGTTGGCGCCTATGCCAACRGCRTCGACGGCRCAGATCCTCGGYAACAAC 130303 Query 95149 GAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTC 95208 |||||| | || || ||||| ||||| |||||||| | || ||||| || || || ||| Sbjct 130302 GAGTCGATTGAGCCATTCACGACCAACATGTACAACCGTCGTGTGCTTGCGGGCGAGTTC 130243 Query 95209 CCCGTCATCAACAAGCACCT 95228 | || | |||||| |||| Sbjct 130242 ACGATCGTGAACAAGTACCT 130223 Score = 289 bits (320), Expect = 3e-73 Identities = 1044/1669 (63%), Gaps = 32/1669 (2%) Strand=Plus/Plus Query 93898 CCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATGACG 93957 || || | |||||| | || || || || ||| | || ||||| ||| || | | Sbjct 123635 CCAACYYTKTTCAACKCKGGTACGCCWCGYCCTCAGYTRTCGTCGTGYTTCTTGCTTGCY 123694 Query 93958 AACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCA 94017 | |||| |||||||| || || | |||| |||||| |||| || ||||| Sbjct 123695 ATGAAGGATGACTCCATYGAGGGTATCTAYGACACGCTCAAGAACTGCGCWTSYATCTCC 123754 Query 94018 AAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATC 94077 || | || || || ||||| |||| | ||| || | ||||||| ||||| Sbjct 123755 AAGTGGGCCGGTGGYATCGGTRTCAGYATGCACAACATCCGTGCCACTAACAGTTACATT 123814 Query 94078 CGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCG 94137 |||||||| || || | || || || ||||| || ||| | || || |||||| || || Sbjct 123815 CGCGGTACGAACGGATCGTCGAATGGTCTCGTTCCAATGTTGCGTGTGTTCAACGACACG 123874 Query 94138 GCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAG 94197 || |||||||| |||||||| || || | | | |||||||| ||||| |||| | ||| Sbjct 123875 GCTCGCTACGTTGACCAGGGCGGAGGCAAGCGCAAGGGTTCGTTCGCCATCTACTTGGAG 123934 Query 94198 CCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTG 94257 || |||||||||||| | | ||| | ||| || ||||||||||| || || || Sbjct 123935 CCATGGCACGCGGACATCTTCGAGTTCTTGGACTTGAAGAAGAACCACGGTAATGAGCTC 123994 Query 94258 GAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTC 94317 | | || | || | || |||| | ||| | ||||| | || ||||| || || Sbjct 123995 CAYCGTGCTCGTGAYYTMTTYTACGSGTTGTGGATCCCAGATTTGTTCATGAAGCGTGTG 124054 Query 94318 GAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGACGTT 94377 || ||| | |||||| | || || || || || | || || | | Sbjct 124055 GARKCGAACGGYGAMTGGAGTTTGTTCTGCCCRAACGARGCYCMWGGYCTCTACRRSTGC 124114 Query 94378 TGTGGATCGCGTTTTGAAGAC-TTGTATGCTCGTTACGAATCGCAGGGCAAGGCCAGGAA 94436 || || | || |||| ||||| || || ||| | | || ||||| | || Sbjct 124115 TG-GGGYGARGAGTTCGAGACRTTGTACGCCAAGTAYGAAGCTGARGGAAAGGCTCGCAA 124173 Query 94437 GGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGGTAC 94496 | || |||| | |||| ||| || | || ||| | ||||||||||| Sbjct 124174 GACCATCCGTGCTCAGCAGCTCTGGTTCGCYATYCTCGAGTCRCAGATCGAGACGGGTAC 124233 Query 94497 GCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGGGGT 94556 ||| || || ||| |||||| | | || |||||| ||||||||| ||||||| Sbjct 124234 GCCKTAYATGYTGTACAAGGAYGCGGCSAAYCGCAAGTCGAACCAGCAGAACCTCGGTAC 124293 Query 94557 GATCAAGAGCTCG---AATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGAT 94613 |||| ||||| || ||||| ||| | ||||||| || | |||| ||| | Sbjct 124294 GATC---CGCTCGAGCAACTTGTGCTGTGAGGTGATCGAGTACACAGATTCGGATGAGGT 124350 Query 94614 TGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTACACGTC 94673 ||||| || ||||| | || || || | | |||||| | || | | | | Sbjct 124351 SGCTGTRTGCAACCTYGCGTCGATYGCYCTWCCRAAGTTCGTGRGTGAGG-----AYGGC 124405 Query 94674 TACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATGGTCTTGAACCT 94733 | || || | || || | | | | || |||||| Sbjct 124406 AA-------GTAYGAYTTCSAGAAGYTSTACMAGGTARCCAARMWRGTGACGAAGAACCT 124458 Query 94734 GAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAACCTGAA 94793 ||||| ||| ||||||| |||| |||||| | || ||||| |||| ||| || Sbjct 124459 GAACAAGGTCATCGACATCAACTACTACCCRATYCCAGAGGCCAAGAAGAGYAACATGCG 124518 Query 94794 GCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGATGCGTCT 94853 || || || || || |||| || |||||| |||| || || | | ||||| || Sbjct 124519 CCACCGTCCTATYGGTMTCGGTGTGCAGGGTCTCGCCGATACGTTCATCCTGATG-AACT 124577 Query 94854 GC-CCTACGACTCTGTCGACGC-GGCGGGTTTGAATTTGAACATATTCGAAAGCATTTAT 94911 | | | ||| || ||| || ||| | ||||| | |||| ||||| | | || Sbjct 124578 ACGCGTTCGAAAGTGACGAGGCTCGCGAG-TTGAACAAGCACATCTTCGAGACGCTGTAC 124636 Query 94912 TACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCCACACGAATCG 94971 | || || ||| | || | | || || || || ||| |||| || Sbjct 124637 TTTGGTGCGATGGAGGCGTCGATGGAGTTRGCTR---AGGTSMAYGGTCCATACGAGACG 124693 Query 94972 TTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTGTGAAGC-- 95029 || || || || || ||||||| || ||||| ||| | |||||||||| || Sbjct 124694 TTYGCTGGCTCRCCAGTGAGCAAGGGCATCTTCCAGTTYGACATGTGGGGTGTGACGCCA 124753 Query 95030 -CCTCGGGTCTGTACGACTGGGAAGCTCTACGCGCTGATGTTATCAAACACGGTGTGAAA 95088 | ||||| ||| |||||| | || | ||| | || || | ||||||||| Sbjct 124754 TCGTCGGGCATGTGGGACTGGAACGCGTTGAAGGCTCAGGTGATGGAGCACGGTGTGCGC 124813 Query 95089 AACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAAC 95148 ||| || || | |||| || ||||| || || || ||||| |||||||| || |||||| Sbjct 124814 AACTCGTTGTTGTTGGCGCCTATGCCAACRGCRTCGACGGCRCAGATCCTCGGYAACAAC 124873 Query 95149 GAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTC 95208 |||||| | || || ||||| ||||| |||||||| | || ||||| || || || ||| Sbjct 124874 GAGTCGATTGAGCCATTCACGACCAACATGTACAACCGTCGTGTGCTTGCGGGCGAGTTC 124933 Query 95209 CCCGTCATCAACAAGCACCTCCTACGGGACCTGA-CGTCTCTGGGTGTGTGGGGTGACAA 95267 | || | |||||| |||| | ||| ||| || | |||| | ||| | Sbjct 124934 ACGATCGTGAACAAGTACCTGATGAAGGAGTTGATCGAGT-TGGGCATCTGGACGCCGGA 124992 Query 95268 GGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCGCAAATACCGGA 95327 || ||||| | || | || | |||| || || ||||| | | || || | Sbjct 124993 AGTGCGCAACCAGATCCTCCACGACCACGGTTCGGTGCAGAATGTGCGTGTGATTCCTCA 125052 Query 95328 GGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGCGTGATACTCGACCA 95387 | | |||| |||||||| |||||||||||| |||| | | || ||| Sbjct 125053 GCCGGTGAAGGACAAGTACAAGACGGTGTGGGAGATCAAGCAGAAGGCTGTTCTTGACAT 125112 Query 95388 CGCGGCCGCCCGCGGGCCCTTCATCTGCCAGAGNNNNNNNNNNNNNNNNNNNATGGCCGA 95447 || |||| ||| || | |||||||||||||| || || || Sbjct 125113 GGCCGCCGACCGTGGTGCTTTCATCTGCCAGAGTCAGTCGCTCAACGTGCATATTGCTGA 125172 Query 95448 GCCCAGTCGCGGAAAAATAACGTCCATGTTGTTCTACGGGTGGAGAAAGGGTCTCAAGAC 95507 ||| | | | || | ||||| ||| ||||| | |||| ||||| | ||||| Sbjct 125173 GCCGACGATCAGTAAGTTGACGTCGATGCACTTCTATGCATGGAAGAAGGGATTGAAGAC 125232 Query 95508 CGGTATGTATTATTTGCGAACCAGGCCAAAGGCGGACTCCATACAGTTC 95556 |||||||| || | || || |||||||||| || | || |||||| Sbjct 125233 AGGTATGTACTACCTCCGCACGCAGCCAAAGGCGAACGCGATCCAGTTC 125281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494721097426400