Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F002073175.1_202017-03-28] 340 sequences; 36,794,057 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1 105 7e-18 seq296 104 2e-17 seq14 89.7 5e-13 >seq1 Length=1427593 Score = 105 bits (116), Expect = 7e-18 Identities = 154/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 52626 ATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAG 52685 ||||| |||||||| | | || | |||| || |||||||| | || |||||| || | Sbjct 982004 ATCGAGAAGGAGTTCGTCAAGGACTCGCTCCCAGTCGAGCTTATCGGTATGAACTCGGCG 981945 Query 52686 TCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCA-GCTCGGGCAGCC 52744 ||||||| ||||||||||||| || || |||||||| | || |||| | | | Sbjct 981944 CTCATGTGCCAGTACATCGAGTTCGTCGCTGATCGTCTTCTC---CACGCTCTTGGTGTC 981888 Query 52745 A--AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGC 52802 ||| || |||||| || || ||||| | ||| | | || ||||| ||||| Sbjct 981887 TCGAAGATCTACAACGCGTCTAACCCATTTGACTGGATGGATATGATCTCGCTCCAGGGC 981828 Query 52803 AAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 ||||||||||| ||||||||||| || || || || Sbjct 981827 AAGACCAACTTCTTCGAGAAGCGTGTTGGTGAATA 981793 >seq296 Length=213998 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || || || | | | |||||||| || ||||||||||| Sbjct 98302 CCACCACGAAGACGGAGCACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCCGAG 98361 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||||||| || || |||| |||| |||||||| ||||| || || Sbjct 98362 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGTGGA 98421 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| ||| || || || | | || | | |||| | | ||| || Sbjct 98422 ATTCCTTCCTTGTCCTGGATCTTCTGCTTGACGTTGTCAATGCTGTCCGATGGCTCGACA 98481 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| ||| | || || || |||||||| || ||||| |||||||| Sbjct 98482 TCGAGCGTGATGGTCTTGCCCGTCAGAGTCTTCACAAAGATCTGCAT 98528 >seq14 Length=753269 Score = 89.7 bits (98), Expect = 5e-13 Identities = 161/234 (69%), Gaps = 5/234 (2%) Strand=Plus/Minus Query 153018 ATCAAGTACTGGTTGACCA-CTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATT 153076 |||| ||||| ||| || | | |||| ||||||||| | ||| || | || | || Sbjct 124956 ATCAGGTACTTGTTCACGATCGTGAA-CTCGCCCGCAAGCACACGACGGTTGTACATGTT 124898 Query 153077 GCTAGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGG 153136 | | ||||| || |||| || ||||| || || || || || ||||| | || || || Sbjct 124897 GGTCGTGAATGGCTCAATCGACTCGTTGTTRCCGAGGATCTGYGCCGTCGAYGCYGTTGG 124838 Query 153137 CATGTACGCCACCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAACGC 153196 ||| ||||| |||||| || || |||| |||||| | | | |||||||||| Sbjct 124837 CATAGGCGCCAACAACAACGAGTTGCGCACACCGTGCTCCATCACCTGAGCCTTCAACGC 124778 Query 153197 CTGCCAATCCCACA---GCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAA 153247 | ||| ||||||| || ||| || ||| | ||||||||| |||| || Sbjct 124777 GTTCCAGTCCCACATGCCCGACGATGGCGTCACACCCCACATGTCRAACTGGAA 124724 Score = 89.7 bits (98), Expect = 5e-13 Identities = 161/234 (69%), Gaps = 5/234 (2%) Strand=Plus/Plus Query 153018 ATCAAGTACTGGTTGACCA-CTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATT 153076 |||| ||||| ||| || | | |||| ||||||||| | ||| || | || | || Sbjct 130220 ATCAGGTACTTGTTCACGATCGTGAA-CTCGCCCGCAAGCACACGACGGTTGTACATGTT 130278 Query 153077 GCTAGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGG 153136 | | ||||| || |||| || ||||| || || || || || ||||| | || || || Sbjct 130279 GGTCGTGAATGGCTCAATCGACTCGTTGTTRCCGAGGATCTGYGCCGTCGAYGCYGTTGG 130338 Query 153137 CATGTACGCCACCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAACGC 153196 ||| ||||| |||||| || || |||| |||||| | | | |||||||||| Sbjct 130339 CATAGGCGCCAACAACAACGAGTTGCGCACACCGTGCTCCATCACCTGAGCCTTCAACGC 130398 Query 153197 CTGCCAATCCCACA---GCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAA 153247 | ||| ||||||| || ||| || ||| | ||||||||| |||| || Sbjct 130399 GTTCCAGTCCCACATGCCCGACGATGGCGTCACACCCCACATGTCRAACTGGAA 130452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496260290884800