Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F002073175.1_202017-03-28] 340 sequences; 36,794,057 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq14 136 4e-27 seq235 116 4e-21 seq1 82.4 7e-11 >seq14 Length=753269 Score = 136 bits (150), Expect = 4e-27 Identities = 325/491 (66%), Gaps = 4/491 (1%) Strand=Plus/Minus Query 145719 GTCGACGGTGAACTGCGTCGCTTGAGCGGCCGGTTTTGTGCGCAGATAGTACATGCCGGT 145778 ||| || |||||||| |||| | || || | ||||| || |||||||| || || Sbjct 125290 GTCCACAGTGAACTGGATCGCGTTCGCCTTTGGCTGCGTGCGGAGGTAGTACATACCTGT 125231 Query 145779 CTTGAGCTGTTTCTGCCACGTGTAAAAGTGTATGCTCGACA--TGACCGAGTACGTGGGT 145836 ||| | |||| ||| | || ||||| || || || | || || ||| || Sbjct 125230 CTTCAATCCCTTCTTCCATGCATAGAAGTGCATCGACGTCAACTTACTGAT--CGTCGGC 125173 Query 145837 TCGGCGACAAACAAATTTAGAGATTGGCTCTGATCAATGAAAGGAGCCCGGTCGGCGGCC 145896 || || | | || || || || || ||||| ||||||| | | |||||||||||| Sbjct 125172 TCAGCAATATGCACGTTGAGCGACTGACTCTGGCAGATGAAAGCACCACGGTCGGCGGCC 125113 Query 145897 ATGTCTATCATGCACTTTGATTTAATTTCCCATGCGGTTTTAAAGAGATCCTTGACGTGC 145956 ||||| | | ||| || || ||||| | || || | ||||| || || Sbjct 125112 ATGTCAAGAACAGCCTTCTGCTTGATCTCCCACACCGTCTTGTACTTGTCCTTCACCGGC 125053 Query 145957 TGGGGTATTTCGTCAATGTTCTGCACAGACCCATTTTCGGCCAATATTTTGTTGCGCAAT 146016 || || || | | |||||||| || || | ||| | || | |||||||| | Sbjct 125052 TGAGGAATCACACGCACATTCTGCACCGAACCGTGGTCGTGGAGGATCTGGTTGCGCACT 124993 Query 146017 TCTGGAGTGTAAATGTTCAAGTCTACGAGGGCCTTGATGAGATACTGGTTGACCACCTGA 146076 || || || | ||| ||| || | | |||| || || |||| ||| || | | Sbjct 124992 TCCGGCGTCCAGATGCCCAACTCGATCAACTCCTTCATCAGGTACTTGTTCACGATCGTG 124933 Query 146077 AACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCTGGTGAACGGCTCGAACGACTCG 146136 |||||||| || || || || | |||| |||| | ||||| ||||| | ||||||| Sbjct 124932 AACTCGCCCGCAAGCACACGACGGTTGTACATGTTGGTCGTGAATGGCTCAATCGACTCG 124873 Query 146137 TTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATGTACGCCACCAGCAAAGAGTTT 146196 ||||| ||||| ||||| ||||||| || || ||||| ||||| || ||| ||||| Sbjct 124872 TTGTTRCCGAGGATCTGYGCCGTCGAYGCYGTTGGCATAGGCGCCAACAACAACGAGTTG 124813 Query 146197 CTCACGCCGTG 146207 | ||| ||||| Sbjct 124812 CGCACACCGTG 124802 Score = 122 bits (134), Expect = 8e-23 Identities = 322/491 (66%), Gaps = 4/491 (1%) Strand=Plus/Plus Query 145719 GTCGACGGTGAACTGCGTCGCTTGAGCGGCCGGTTTTGTGCGCAGATAGTACATGCCGGT 145778 ||| || |||||||| |||| | || || | ||||| || |||||||| || || Sbjct 129886 GTCCACAGTGAACTGGATCGCGTTCGCCTTTGGCTGCGTGCGGAGGTAGTACATACCCGT 129945 Query 145779 CTTGAGCTGTTTCTGCCACGTGTAAAAGTGTATGCTCGACA--TGACCGAGTACGTGGGT 145836 ||| | |||| ||| | || ||||| || || || | || || ||| || Sbjct 129946 CTTCAATCCCTTCTTCCATGCATAGAAGTGCATCGACGTCAACTTACTGAT--CGTCGGC 130003 Query 145837 TCGGCGACAAACAAATTTAGAGATTGGCTCTGATCAATGAAAGGAGCCCGGTCGGCGGCC 145896 || || | | || || | ||||| || || |||| | | | | |||||||||||| Sbjct 130004 TCAGCAATATGCACGTTCATCGATTGACTTTGGCAAATGTATGCACCACGGTCGGCGGCC 130063 Query 145897 ATGTCTATCATGCACTTTGATTTAATTTCCCATGCGGTTTTAAAGAGATCCTTGACGTGC 145956 | || | || ||| || || ||||| | || || | ||||| || || Sbjct 130064 AAATCGAGGATAGCCTTCTGCTTGATCTCCCACACCGTCTTGTACTTGTCCTTCACCGGC 130123 Query 145957 TGGGGTATTTCGTCAATGTTCTGCACAGACCCATTTTCGGCCAATATTTTGTTGCGCAAT 146016 || || || | | |||||||| || || | ||| | || | |||||||| | Sbjct 130124 TGAGGAATCACACGCACATTCTGCACCGAACCGTGGTCGTGGAGGATCTGGTTGCGCACT 130183 Query 146017 TCTGGAGTGTAAATGTTCAAGTCTACGAGGGCCTTGATGAGATACTGGTTGACCACCTGA 146076 || || || | ||| ||| || | | |||| || || |||| ||| || | | Sbjct 130184 TCCGGCGTCCAGATGCCCAACTCGATCAACTCCTTCATCAGGTACTTGTTCACGATCGTG 130243 Query 146077 AACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCTGGTGAACGGCTCGAACGACTCG 146136 |||||||| || || || || | |||| |||| | ||||| ||||| | ||||||| Sbjct 130244 AACTCGCCCGCAAGCACACGACGGTTGTACATGTTGGTCGTGAATGGCTCAATCGACTCG 130303 Query 146137 TTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATGTACGCCACCAGCAAAGAGTTT 146196 ||||| ||||| ||||| ||||||| || || ||||| ||||| || ||| ||||| Sbjct 130304 TTGTTRCCGAGGATCTGYGCCGTCGAYGCYGTTGGCATAGGCGCCAACAACAACGAGTTG 130363 Query 146197 CTCACGCCGTG 146207 | ||| ||||| Sbjct 130364 CGCACACCGTG 130374 >seq235 Length=453453 Score = 116 bits (128), Expect = 4e-21 Identities = 121/156 (78%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || ||||| ||||||||||||||||||| ||||| ||||| |||||| Sbjct 11179 TCCTCGAGCTGCTTACCAGCAAAGATCAATCGCTGCTGATCTGGAGGAATGCCTTCCTTG 11238 Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 ||| ||| |||||||||| |||| || | | ||||| | |||||| || | || | Sbjct 11239 TCCTGGATCTTCTGCTTGACGTTG-TCAATCGAGTCCGAAGGCTCGACGTCCAACGTAAT 11297 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||||||| || || || || || |||||||| Sbjct 11298 GGTCTTGCCGGTGAGTGTCTTGACGAAGATCTGCAT 11333 Score = 89.7 bits (98), Expect = 5e-13 Identities = 97/126 (77%), Gaps = 2/126 (2%) Strand=Plus/Minus Query 126989 CGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGAC 127047 ||||||||||| ||||| || |||||||||||| ||| |||||||| | |||| || | Sbjct 29427 CGCTGCTGATCTGGAGGAATACCCTCCTTGTCCTGGATCTTCTGCTTCACGTTG-TCAAT 29369 Query 127048 GGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAAT 127107 | ||||| | |||||| || | || | ||| |||||||||| || || || || || Sbjct 29368 CGAGTCCGAAGGCTCGACGTCAAGCGTGATCGTCTTGCCGGTCAATGTCTTCACGAAGAT 29309 Query 127108 CTGCAT 127113 |||||| Sbjct 29308 CTGCAT 29303 >seq1 Length=1427593 Score = 82.4 bits (90), Expect = 7e-11 Identities = 123/170 (72%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 47412 GGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTT 47471 || |||||| ||| | | ||| | |||||||||| || ||||| || || || ||| Sbjct 981959 GGTATGAACTCGGCGCTCATGTGCCAGTACATCGAGTTCGTCGCTGATCGTCTTCTC--- 981903 Query 47472 CA-GCTAAAG-TATCCC-AAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAAC 47528 || ||| | | || | ||||| ||| || | || ||||| || | ||| | | Sbjct 981902 CACGCTCTTGGTGTCTCGAAGATCTACAACGCGTCTAACCCATTTGACTGGATGGATATG 981843 Query 47529 ATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 || |||||| |||||||||||||||| ||||||||||| || || ||||| Sbjct 981842 ATCTCGCTCCAGGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGTGAATA 981793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475498779121600