Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F002073175.1_202017-03-28] 340 sequences; 36,794,057 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq14 183 5e-41 seq1 132 8e-26 >seq14 Length=753269 Score = 183 bits (202), Expect = 5e-41 Identities = 403/595 (68%), Gaps = 17/595 (3%) Strand=Plus/Minus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTT-CTCAGATAGTACATGC 203897 ||||||||| |||||||| || |||||| | ||| ||| | | || |||||||| | Sbjct 125293 CTTGTCCACAGTGAACTGGATCGCGTTCGCCTTTGGC-TGCGTGCGGAGGTAGTACATAC 125235 Query 203898 CGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGG 203957 | ||||| | ||||||| ||| | || | |||||| || | || || || | | | Sbjct 125234 CTGTCTTCAATCCCTTCTTCCATGCATAGAAGTGCATCGACGTCAACTTACTGATCGTCG 125175 Query 203958 GGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGG 204017 | || || || || | ||| || ||||| || ||| |||||||| | || || |||| Sbjct 125174 GCTCAGCAATATGCACGTTGAGCGACTGACTCTGGCAGATGAAAGCACCACGGTCGGCGG 125115 Query 204018 CCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGT 204077 |||| | | || | ||||||| |||||||||||||||||| || ||| | Sbjct 125114 CCATGTCAAGAACAGCCTTCTGCTTGATCTCCCACACCGTCTTGTACTTGTCCTTCACCG 125055 Query 204078 GTTGAGG---CACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCT-CAT 204132 | ||||| |||| | ||| | ||| | ||| |||| |||| | | ||| | Sbjct 125054 GCTGAGGAATCACA----CGCACATTCTGCACCGAACCGTGGTCGTGGAGGA-TCTGGTT 125000 Query 204133 CCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGAT 204192 | | ||| | ||| ||||||||| ||||| |||| || ||||| ||| | Sbjct 124999 GCGCACTTCCGGCGTCCAGATGCCCAACTCGATCAACTCCTTCATCAGGTACTTGTTCAC 124940 Query 204193 GATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAA 204252 |||| || || || | ||||| | ||| || ||| |||| | |||||||| || | Sbjct 124939 GATCGTGAACTCGCCCGCAAGCACACGACGGTTGTACATGTTGGTCGTGAATGGCTCAAT 124880 Query 204253 CGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAG 204312 || ||||||||| |||| ||||| || || || || ||||| || |||| | || Sbjct 124879 CGACTCGTTGTTRCCGAGGATCTGYGCCGTCGAYGCYGTTGGCATAGGCGCCAACAACAA 124820 Query 204313 GGAGTTGCGCACACCGTATTTTTGGACCCTGCG-CTTCAGAGAGGTCCAGTCGTGCAT-- 204369 |||||||||||||||| | | |||| | ||||| | | ||||||| ||| Sbjct 124819 CGAGTTGCGCACACCGTGCTCCATCA-CCTGAGCCTTCAACGCGTTCCAGTCCCACATGC 124761 Query 204370 -CGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGG 204423 || || |||| ||||||||||| ||||| |||||||| | || ||||| Sbjct 124760 CCGACGATGGCGTCACACCCCACATGTCRAACTGGAAGATGCCCTTGCTCACTGG 124706 Score = 174 bits (192), Expect = 2e-38 Identities = 401/595 (67%), Gaps = 17/595 (3%) Strand=Plus/Plus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTT-CTCAGATAGTACATGC 203897 ||||||||| |||||||| || |||||| | ||| ||| | | || |||||||| | Sbjct 129883 CTTGTCCACAGTGAACTGGATCGCGTTCGCCTTTGGC-TGCGTGCGGAGGTAGTACATAC 129941 Query 203898 CGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGG 203957 | ||||| | ||||||| ||| | || | |||||| || | || || || | | | Sbjct 129942 CCGTCTTCAATCCCTTCTTCCATGCATAGAAGTGCATCGACGTCAACTTACTGATCGTCG 130001 Query 203958 GGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGG 204017 | || || || || | ||||| || || |||||| ||| | | | || || |||| Sbjct 130002 GCTCAGCAATATGCACGTTCATCGATTGACTTTGGCAAATGTATGCACCACGGTCGGCGG 130061 Query 204018 CCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGT 204077 ||| || || || | ||||||| |||||||||||||||||| || ||| | Sbjct 130062 CCAAATCGAGGATAGCCTTCTGCTTGATCTCCCACACCGTCTTGTACTTGTCCTTCACCG 130121 Query 204078 GTTGAGG---CACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCATC 204133 | ||||| |||| | ||| | ||| | ||| |||| |||| | | ||| | Sbjct 130122 GCTGAGGAATCACA----CGCACATTCTGCACCGAACCGTGGTCGTGGAGGA-TCTGGTT 130176 Query 204134 -CTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGAT 204192 | | ||| | ||| ||||||||| ||||| |||| || ||||| ||| | Sbjct 130177 GCGCACTTCCGGCGTCCAGATGCCCAACTCGATCAACTCCTTCATCAGGTACTTGTTCAC 130236 Query 204193 GATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAA 204252 |||| || || || | ||||| | ||| || ||| |||| | |||||||| || | Sbjct 130237 GATCGTGAACTCGCCCGCAAGCACACGACGGTTGTACATGTTGGTCGTGAATGGCTCAAT 130296 Query 204253 CGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAG 204312 || ||||||||| |||| ||||| || || || || ||||| || |||| | || Sbjct 130297 CGACTCGTTGTTRCCGAGGATCTGYGCCGTCGAYGCYGTTGGCATAGGCGCCAACAACAA 130356 Query 204313 GGAGTTGCGCACACCGTATTTTTGGACCCTGCG-CTTCAGAGAGGTCCAGTCGTGCAT-- 204369 |||||||||||||||| | | |||| | ||||| | | ||||||| ||| Sbjct 130357 CGAGTTGCGCACACCGTGCTCCATCA-CCTGAGCCTTCAACGCGTTCCAGTCCCACATGC 130415 Query 204370 -CGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGG 204423 || || |||| ||||||||||| ||||| |||||||| | || ||||| Sbjct 130416 CCGACGATGGCGTCACACCCCACATGTCRAACTGGAAGATGCCCTTGCTCACTGG 130470 >seq1 Length=1427593 Score = 132 bits (146), Expect = 8e-26 Identities = 412/627 (66%), Gaps = 27/627 (4%) Strand=Plus/Plus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||| |||||||||||||||| | || || ||||| | | |||||||| Sbjct 981807 CTTCTCGAAGAAGTTGGTCTTGCCCTGGAGCGAGATCATATCCATCCAGTCAAATGGGTT 981866 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 | ||| ||| ||||| | || ||||| || | | || || || || || Sbjct 981867 AGACGCGTTGTAGATCTTCGAGACACCAAGAGCGTGGAGAAGACGATCAGCGACGAACTC 981926 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 |||||| ||||| || | |||| || || | ||| || ||||||| ||| Sbjct 981927 GATGTACTGGCACATGAGCGCCGAGTTCATACCGATAAGCTCGACTGGGAGCGAGTCCTT 981986 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTACCC 159888 | ||||||||||| ||| ||| || || | ||||||| || || || || | Sbjct 981987 GACGAACTCCTTCTCGATCGTGACGGCATCACTGACAATCTCGTGGATTCG--CG-ACTC 982043 Query 159889 CGGC------TTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAG 159942 || ||| | | ||| || | || | ||| || ||||| ||||| || Sbjct 982044 TGGGAGACGGTTGACAAGCTTGTTGT------AGAGCAAGCAGGCGAAGTCACAGTGGAG 982097 Query 159943 TCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGG 160002 || ||||| ||| ||| | |||||| || | | ||||||| ||||||| |||||| Sbjct 982098 ACCTTCGTCACGACTGATAAGCTCGTTCGAGAAGCTGAGGCCAGGCATGAGACCACGCTT 982157 Query 160003 TTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAA-AAGATCCCCTCCACGGCCGCAA 160061 |||||||| || | | ||| || | | | | || ||||| ||||| | ||| || | Sbjct 982158 CTTGAGCCAGAAGACCGA-GCAGAACGAACCCGAGAAGAAGATACCCTCAATGGCAGCGA 982216 Query 160062 ACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTC-CACCTTTTG---GCC 160117 | || |||| | |||| |||| | |||||| || || ||| |||| | ||| Sbjct 982217 AGGCGACGACACGCTCAGCAAACGCGGCGTTC---TC-TGAGTCACACCAGCGGAGCGCC 982272 Query 160118 CATTCAGCCTTCTT-TGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTG 160176 || | |||||||| ||| | ||| || || ||| | |||| ||||| || || Sbjct 982273 CAGTTGGCCTTCTTCTGC-ACGCATGGGATTGTCTCAATGGCGCGGAACAAGTGGTTCTT 982331 Query 160177 CTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATT 160236 ||| |||||||||| || |||||| | |||||||||||| | ||| | || Sbjct 982332 CTCGGCGGCATCCTTGATGTACGTGTCAATCAACAGCGAGTACATTTCCGGGTGGATGTT 982391 Query 160237 TTCGATGGCCATCTGAAAGTTGTAGAA 160263 || ||||| ||||| ||| |||||| Sbjct 982392 CTCAATGGCAATCTGGAAGCCGTAGAA 982418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795151820590400