Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F002073175.1_202017-03-28] 340 sequences; 36,794,057 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq296 161 1e-34 seq235 96.9 4e-15 >seq296 Length=213998 Score = 161 bits (178), Expect = 1e-34 Identities = 172/223 (77%), Gaps = 8/223 (4%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | ||||| ||||| || |||||| ||||| |||||||| || || ||||| | Sbjct 98313 ACGGAGCACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCC 98372 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| |||||||||||||||||||| |||| ||||||||||| | || | | ||||| Sbjct 98373 GTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGTGGAATTCCTTCCTT 98432 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCG-TGTCGCTCGAT---TCCACATCCACCG 46553 |||| |||||||| ||||| ||| | || | |||| |||| || ||||| | || Sbjct 98433 GTCCTGGATCTTCTGCTTGA-CGTTGTCAATGCTGTC---CGATGGCTCGACATCGAGCG 98488 Query 46554 TGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 ||||||| ||||||||||| || || |||||||| ||||| || Sbjct 98489 TGATGGTCTTGCCCGTCAGAGTCTTCACAAAGATCTGCATCTT 98531 >seq235 Length=453453 Score = 96.9 bits (106), Expect = 4e-15 Identities = 128/175 (73%), Gaps = 2/175 (1%) Strand=Plus/Plus Query 46424 GATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCC 46483 || || || || |||| ||||||||||| || || || ||||| |||||||| || | Sbjct 11164 GAGAGGGTACGGCCGTCCTCGAGCTGCTTACCAGCAAAGATCAATCGCTGCTGATCTGGA 11223 Query 46484 GGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTC 46542 || | || ||||||||| |||||||| ||||| ||| | | | || ||| | || Sbjct 11224 GGAATGCCTTCCTTGTCCTGGATCTTCTGCTTGA-CGTTGTCAATCGAGTCCGAAGGCTC 11282 Query 46543 CACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 || |||| ||| ||||| ||||| || || || || || ||||| ||||| ||| Sbjct 11283 GACGTCCAACGTAATGGTCTTGCCGGTGAGTGTCTTGACGAAGATCTGCATCTTG 11337 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||||| ||||| ||| |||||| ||||| |||||||| || || ||||| |||| || Sbjct 30181 CACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGACCGTCCTC 30122 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCT 46472 |||||||||||| || || ||||| |||| Sbjct 30121 GAGCTGCTTGCCAGCAAAGATCAATCGCT 30093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565235997736800