Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F002073175.1_202017-03-28] 340 sequences; 36,794,057 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq1 235 5e-57 seq296 143 3e-29 >seq1 Length=1427593 Score = 235 bits (260), Expect = 5e-57 Identities = 436/633 (69%), Gaps = 10/633 (2%) Strand=Plus/Plus Query 132883 TTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTG 132942 ||| | | |||||| || ||||| || || | || ||||| | || || ||||| Sbjct 982066 TTGTAGAGCAAGCAGGCGAAGTCACAGTGGAGACCTTCGTCACGACTGATAAGCTCGTTC 982125 Query 132943 CTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTG 133002 ||| | | ||| |||||||| || || || |||||||| || | | | ||| Sbjct 982126 GAGAAGCTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAGACCGAGCAGAACGAA 982185 Query 133003 CCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGC- 133061 ||||| ||||||| ||||| | ||| ||||| || || | ||||| | |||| ||| Sbjct 982186 CCCGAGAAGAAGATACCCTCAATGGCAGCGAAGGCGACGACACGCTCAGCAAACGCGGCG 982245 Query 133062 TTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGT 133121 |||| || | | |||||| |||||||| | |||||| | | ||||| || || || Sbjct 982246 TTCTCTGA-GTCACACCAGCGGAGCGCCCAGTTGGCCTTCTTCTGCACGCATGGGATTGT 982304 Query 133122 TTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGC---ACGTAGGTGTCGAT 133178 || |||||| ||||| || |||| || | || | | | ||| ||||| || Sbjct 982305 CTCAATGGCGCGGAACAAGTGG---TTCTTCTCGGCGGCATCCTTGATGTACGTGTCAAT 982361 Query 133179 GAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCA 133238 | ||| |||||||||| ||| | |||||| ||||| || || |||||||| ||||| Sbjct 982362 CAACAGCGAGTACATTTCCGGGTGGATGTTCTCAATGGCAATCTGGAAGCCGTAGAAGCA 982421 Query 133239 CCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGAT 133298 || || || |||||| ||||| | ||| | | | || || ||||| || || Sbjct 982422 GCGGGCTTCAGGCACCTGGACTTCGTTGCTGAAGTTCATGGCAAGGTTCTCGTTCACAAT 982481 Query 133299 GCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTT 133358 || || ||||| ||||| || || ||||||||||||||||| || ||||| |||||| | Sbjct 982482 ACCATCACTGGCAGCGAAGAACGCGAGCACGTGCTTGATGAAGTGACGCTCATTGTCGGT 982541 Query 133359 CAAGCGCTCCCAGTCGCGCGTGTCCTTGGAC-AGGTCCACCTCCTCGACGGTCCAAAACG 133417 || | ||||||| | | | | || || || || | ||||||||| ||||| || Sbjct 982542 CATGTTGCCCCAGTC-CTTGAGGTCGTGCACAAGATCGATCTCCTCGACCGTCCAGAAGC 982600 Query 133418 ACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAA 133477 || || || || ||||||||| ||| || ||| | || || || || | ||| | Sbjct 982601 TGGCTTCCGCCTTCTTGTACATATCCCAGATCTCCTTCTCCTGGATCGGGAAGAGCACGA 982660 Query 133478 ACCGGCGGGGGTTTTCGCGCAACAGCGGCTCCG 133510 | ||| ||||| ||||| | ||| ||||||| Sbjct 982661 ATCGGTTTGGGTTCTCGCGAAGCAGAGGCTCCG 982693 >seq296 Length=213998 Score = 143 bits (158), Expect = 3e-29 Identities = 166/221 (75%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||| ||||| || || || || || || |||||||| |||||||| |||| |||||| | Sbjct 98532 AAAGATGCAGATCTTTGTGAAGACTCTGACGGGCAAGACCATCACGCTCGATGTCGAGCC 98473 Query 38300 CACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG 38358 | |||||| | | |||| | || | || |||| ||||| || |||||||| | | Sbjct 98472 ATCGGACAGCATTGACAACG-TCAAGCAGAAGATCCAGGACAAGGAAGGAATTCCACCAG 98414 Query 38359 ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 38418 |||| ||||| || || | ||| ||||| ||||| || |||| ||||| ||| |||| Sbjct 98413 ACCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACT 98354 Query 38419 ACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||||| ||||| |||| |||| |||||||| ||| Sbjct 98353 ACAACATCCAGAAGGAGTCGACCTTGCACTTGGTGCTCCGT 98313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500170674265600