Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F002073175.1_202017-03-28] 340 sequences; 36,794,057 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq14 251 8e-62 seq1 174 2e-38 seq25 93.3 5e-14 >seq14 Length=753269 Score = 251 bits (278), Expect = 8e-62 Identities = 695/1040 (67%), Gaps = 44/1040 (4%) Strand=Plus/Plus Query 106279 ATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGC 106338 ||| |||||||| || ||||| | ||||||||| | ||| ||||| || ||| || Sbjct 130618 ATCGGCGAGACCCTGCACACCGATACCAATAGGACGGTGGCGCATGTTGCTCTTCTTGGC 130677 Query 106339 AGTCTC-AACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCT 106397 ||| || || || | || |||| ||||| ||| || || || || || | | Sbjct 130678 C-TCTGGAATCGGGTAGTAGTTGATGTCGATGACCTTGTTCAGGTTCTTCGTCACT-TGT 130735 Query 106398 TTGTGATTTCATGAAGT--TTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTT 106455 ||| | | | || || || || ||||| | ||| || ||| | || |||| Sbjct 130736 TTG-GCTACCTTGTAGAGCTTCTCGAAATCATACTTGCCG---TCCTCACTCACGAACTT 130791 Query 106456 TGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAA 106515 || |||||||| || || | ||||| ||||| ||||||| |||||||||||| | Sbjct 130792 CGGTAGGGCGATCGACGCAAGGTTGCACACAGCGACCTCATCCGAATCTGTGTACTCGAT 130851 Query 106516 AATTTCTGTACACAAGTTGGAACTCTTA---ATCGTCCCCAAATTCTTTTGGTTACTCTT 106572 | || ||||||||| ||| ||||| || | |||| ||||| ||| Sbjct 130852 CACCTCACAGCACAAGTTG---CTCGAGCGGATCGTACCGAGGTTCTGCTGGTTCGACTT 130908 Query 106573 TTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAG 106632 || |||||||||||| ||||| || ||||| |||||||| ||||||||| ||| Sbjct 130909 GCGATTCGCCGCATCCTTGTACAGCATATACGGCGTACCCGTCTCGATCTGTGACTCGAG 130968 Query 106633 AATTGCCTTCCACACATCGGCGGCTG-GTACA-ATGGCGTTG---GCCCGTCCCTCCGCC 106687 || || ||| | || |||| | || |||| ||| ||| |||||| || Sbjct 130969 GATGGCGAACCAGA-----GCTGCTGAGCACGGATGGTCTTGCGAGCCTTTCCCTCAGCT 131023 Query 106688 TCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCG-TCGGAGAGACCTGGTGC 106746 || ||||| | ||| | | || |||||||| ||| | || ||| |||||||| | || Sbjct 131024 TCATACTTGGCGTACAACGTCTCGAACTCCTCGCCC-CAGCACTCGTAGAGACCTTGAGC 131082 Query 106747 CTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTC 106806 | || ||| ||||| | | ||||| ||| | |||| || ||||||||||| | || Sbjct 131083 TTCGTTTGGGCAGAACAAACTCCATTCACCGTTCGCCTCCACACGCTTCATGAACAAATC 131142 Query 106807 TGGAATCCACAGGGATGAAAAGAGATCTCTA-CACC---GAGCCTCTTCGTCACCTTGGT 106862 ||| ||||||| ||||||| || | | ||| |||| || | ||| |||| Sbjct 131143 TGGGATCCACAACCCGTAAAAGAGGTCACGAGCACGATGGAGC----TCATTACCGTGGT 131198 Query 106863 TGAGTCGT-AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCG 106921 | || | || || | |||||| | ||| ||||||||||||||||| | |||| ||| Sbjct 131199 TCT-TCTTCAAGTCCAAGAACTCGAAGATGTCCGCGTGCCATGGCTCCAAGTAGATGGCG 131257 Query 106922 ATAGATCCCTTTCGAC-GCC--CAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACG 106978 | || ||||| || ||| | | || | || ||||| || ||| |||| || || Sbjct 131258 AACGAACCCTTGCGCTTGCCTCCGCCCTGGTCAACGTAGCGAGCCGTGTCGTTGAACACA 131317 Query 106979 CGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTG 107038 || | |||||||| | ||||| || || || || || ||||| | ||| || Sbjct 131318 CGCAACATTGGAACGAGACCATTCGACGATCCGTTCGTACCGCGAATGTAACTGTTAGTG 131377 Query 107039 GCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACAC 107098 || | | | || || || || || || || |||||||| ||||| || || Sbjct 131378 GCACGGATGTTGTGCATACTGATACCGATGCCACCGGCCCACTTGGAGATAGATGCGCAG 131437 Query 107099 TCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAA 107158 | | | || || | |||||||| | || ||||| ||||| |||| | | ||| || Sbjct 131438 TTCTTGAGCGTGTCGTAGATACCCTCAATGGAGTCATCCTTCATGGCAAGCAAGAAACAC 131497 Query 107159 CTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAAC 107218 |||| ||| || | ||| ||||| | ||||| || ||||||| ||||| |||| Sbjct 131498 GACGACAACTGAGGGCGTGGCGTACCCGAGTTGAAAAGAGTTGGTGAGCCGTGAGTGAAG 131557 Query 107219 ATACCTTGGGACATCTTGTCGTATGTCTCCAAGA-CAGAATCAATGTCTTCCCCGTGGAT 107277 | ||||||||||| | |||||| ||| |||| || | || ||||| |||||| Sbjct 131558 AAGCCTTGGGACATGTAGTCGTACATCT-GAAGAGCACCGGCGATATCTTCTTTGTGGAT 131616 Query 107278 GCCGATGGCCACACGCATAA 107297 |||||| ||||||| ||| Sbjct 131617 GCCGAT--ACACACGCGTAA 131634 Score = 203 bits (224), Expect = 4e-47 Identities = 586/939 (62%), Gaps = 25/939 (3%) Strand=Plus/Minus Query 106452 ACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACT 106511 |||| || || || || || || | ||||| ||||| ||||||| ||||||||||| Sbjct 124388 ACTTYGGWAGRGCRATCGACGCRAGGTTGCAYACAGCSACCTCATCCGAATCTGTGTACT 124329 Query 106512 CTAAAATTTCTGTACACAAGTTGGAACTCTTA---ATCGTCCCCAAATTCTTTTGGTTAC 106568 | | | || ||||||||| ||| ||||| || | |||| ||||| Sbjct 124328 CGATCACCTCACAGCACAAGTTG---CTCGAGCGGATCGTACCGAGGTTCTGCTGGTTCG 124272 Query 106569 TCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACT 106628 ||| || ||| |||||||| | ||| || ||||| |||||||| |||| |||| Sbjct 124271 ACTTGCGRTTSGCCGCRTCCTTGTACARCATRTAMGGCGTACCCGTCTCGATCTGYGACT 124212 Query 106629 TGAGAATTGCCTTCCACACATCGGCGGCTG-GTACA-ATGGCGTTG---GCCCGTCCCTC 106683 ||| || || ||| | || |||| | || |||| ||| ||| ||| || Sbjct 124211 CGAGRATRGCGAACCAGA-----GCTGCTGAGCACGGATGGTCTTGCGAGCCTTTCCYTC 124157 Query 106684 CGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC-GTCGGAGAGACCTG 106742 || || ||||| | ||| | | || ||||| || ||| | || | |||| || Sbjct 124156 AGCTTCRTACTTGGCGTACAAYGTCTCGAACTCYTCRCCC-CAGCASYYGTAGAGRCCWK 124098 Query 106743 GTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAA 106802 | || | || || ||||| | | ||| | || | || || ||||||||||| | Sbjct 124097 GRGCYTCGTTYGGGCAGAACAAACTCCAKTCRCCGTTCGMYTCCACACGCTTCATGAACA 124038 Query 106803 GGTCTGGAATCCACAGGGATGAAAAGAGATCTCTA-CACCGAGCCTCTTCGTCACCTTGG 106861 ||||| ||||||| | || | || | | ||| | || | | ||| ||| Sbjct 124037 AATCTGGGATCCACAACSCGTARAAKARRTCACGAGCACGRTGGAGCT-CATTACCGTGG 123979 Query 106862 TTGAGTCGT-AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGC 106920 || || | || || | |||||| | ||| ||||||||||||||||| | |||| || Sbjct 123978 TTCT-TCTTCAAGTCCAAGAACTCGAAGATGTCCGCGTGCCATGGCTCCAAGTAGATGGC 123920 Query 106921 GATAGATCCCTTTCGAC-GCC--CAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATAC 106977 || || ||||| || ||| | | || | || ||||| || ||| |||| || || Sbjct 123919 GAACGAACCCTTGCGCTTGCCTCCGCCCTGGTCAACGTAGCGAGCCGTGTCGTTGAACAC 123860 Query 106978 GCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATT 107037 || | |||||||| | ||||| || || || || || ||||| | ||| | Sbjct 123859 ACGCAACATTGGAACGAGACCATTCGACGATCCGTTCGTACCGCGAATGTAACTGTTAGT 123800 Query 107038 GGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACA 107097 ||| | | | || || | || || || || |||||||| ||||| || || Sbjct 123799 GGCACGGATGTTGTGCATRCTGAYACCGATRCCACCGGCCCACTTGGAGATRSAWGCGCA 123740 Query 107098 CTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCA 107157 | | | || || | |||||||| | || ||||| ||||| | || | | ||| || Sbjct 123739 GTTCTTGAGCGTGTCRTAGATACCCTCRATGGAGTCATCCTTCATRGCAAGCAAGAARCA 123680 Query 107158 ACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAA 107217 || | ||| || | || ||||| | ||||| | ||||| | |||| |||| Sbjct 123679 CGACGAYARCTGAGGRCGWGGCGTACCMGMGTTGAAMARRGTTGGYGWSSCGTGMGTGAA 123620 Query 107218 CATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGAT 107277 | |||||||| | ||||| ||| | | | || ||||| |||||| Sbjct 123619 GAAGYYYTGGGACATGTAKTCGTASRTCTSRAGMGCMSCSGCRATRTCTTCYTTGTGGAT 123560 Query 107278 GCCGATGGCCACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCG 107337 || || ||| || | | ||| | || || ||||| | ||||| | || Sbjct 123559 RCCRATRCWCACRCGYAARATCATCTGCTGTGGACGCTCCATCACCTTGCCAYYAATGCG 123500 Query 107338 TTGAAGATAGCTCTTCTCAAGGGTTTTGAGACCAAAGTA 107376 | || || || || |||| |||||||| Sbjct 123499 SARSARRTACGAYYKYTCMAGCGTCTTGAAGCCAAAGTA 123461 >seq1 Length=1427593 Score = 174 bits (192), Expect = 2e-38 Identities = 388/578 (67%), Gaps = 12/578 (2%) Strand=Plus/Plus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 || || ||||| |||||||| |||||||||||||| || | || || | ||||| Sbjct 981793 TATTCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGCGAGATCATATCCATC 981852 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCACCCCAACTTGTTTGAGGAGACGA 117105 |||||||||| || |||||| | || | || |||| | ||| |||||| Sbjct 981853 CAGTCAAATGGGTTAGACGCGTTGTAGATCTTCGAGACACCAAGAGCGTGGAGAAGACGA 981912 Query 117106 TCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTACAT 117165 || | || |||| ||||||| | |||| | | |||||||||||||| || | | Sbjct 981913 TCAGCGACGAACTCGATGTACTGGCACATGAGCGCCGAGTTCATACCGATAAGCTCGACT 981972 Query 117166 GGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTGG 117225 ||||| | |||| || |||| | ||||| ||| || || || | || || ||||| Sbjct 981973 GGGAGCGAGTCCTTGACGAACTCCTTCTCGATCGTGACGGCATCACTGACAATCTCGTGG 982032 Query 117226 ATA---GTTTC-GGTAGTGGGTCTATTACGCAAAG--TCTTGAAGAGCTCCACGGCAAAC 117279 || | || || || ||| | || ||| | ||| ||||| ||| || Sbjct 982033 ATTCGCGACTCTGGGAGACGGT---TGAC---AAGCTTGTTGTAGAGCAAGCAGGCGAAG 982086 Query 117280 TCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATG 117339 || ||||||||| || || || ||||| || || ||||||| ||||| |||||| Sbjct 982087 TCACAGTGGAGACCTTCGTCACGACTGATAAGCTCGTTCGAGAAGCTGAGGCCAGGCATG 982146 Query 117340 AGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCC 117399 ||||| |||||||| | ||| | | | |||||| || || ||||||||||||||||| Sbjct 982147 AGACCACGCTTCTTGAGCCAGAAGACCGAGCAGAACGAACCCGAGAAGAAGATACCCTCA 982206 Query 117400 ACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCAAACCATTTC 117459 | || || || | | ||||| || || | | || || |||| |||| Sbjct 982207 ATGGCAGCGAAGGCGACGACACGCTCAGCAAACGCGGCGTTCTCTGAGTCACACCAGCGG 982266 Query 117460 ATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTGC 117519 | ||||| || |||||||||| | ||||| | || | ||||| || || || Sbjct 982267 AGCGCCCAGTTGGCCTTCTTCTGCACGCATGGGATTGTCTCAATGGCGCGGAACAAGTGG 982326 Query 117520 TTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAA 117557 ||||| || | ||||||| ||||| |||||||||| Sbjct 982327 TTCTTCTCGGCGGCATCCTTGATGTACGTGTCAATCAA 982364 >seq25 Length=728326 Score = 93.3 bits (102), Expect = 5e-14 Identities = 173/246 (70%), Gaps = 6/246 (2%) Strand=Plus/Minus Query 168467 AGCATCCTTACCACCCATGAGACGCGTACCAAATTGACCACACGGTTCAAG-AAGGTTAA 168525 |||||||||||||||| || |||||||| |||||||| | || | || || | || Sbjct 453452 AGCATCCTTACCACCCTGAAGTCGCGTACCGAATTGACCCGAAGGGTAGAGCAATGGCAA 453393 Query 168526 TGTTGTTTGAACCCGTGTAGTCGTTTGCCAACTTAACAATCGTGTCCGCTAAG-GATACT 168584 |||||| | ||| |||||| | |||| || ||||| || | | ||| ||| || Sbjct 453392 -GTTGTTCGCACCAACGTAGTCCTGCGCCATATTCACAATTGT-TGAGTGAAGTGATGCT 453335 Query 168585 TCACCATGGTGGTACGCAGACTTGTCCGCGACA-TATGCCGCCAGTTGTGCCACCTTCAT 168643 ||||| |||||||| || | || | | ||| || |||| || || |||||||| | Sbjct 453334 TCACCGTGGTGGTATGCCG-TATGCTCACTACAGTAACCCGCGAGCTGCGCCACCTTGAC 453276 Query 168644 TTCATCCTTGAGATTCTTATGGAAGCAAGCATACATCACTTTCCTCTGTGAAGGCTTGAG 168703 ||| | | |||| || | || ||||| ||| ||| || | |||||| |||||| Sbjct 453275 TTCCTTCGTGAGTTTTCGCTCGAGACAAGCGAACAACACCTTACGCTGTGATACCTTGAG 453216 Query 168704 ACCATC 168709 |||||| Sbjct 453215 ACCATC 453210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589978292581600