Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F002073175.1_202017-03-28] 340 sequences; 36,794,057 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq1 244 2e-59 seq14 150 3e-31 >seq1 Length=1427593 Score = 244 bits (270), Expect = 2e-59 Identities = 576/859 (67%), Gaps = 27/859 (3%) Strand=Plus/Plus Query 47842 GTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCAT 47901 ||| || || || | ||||| |||||||| ||||| |||| | |||||| | ||||| Sbjct 981792 GTATTCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGCGAGATCATATCCAT 981851 Query 47902 GAAGAGGAAGGGGTTGGGTGTGTTATACACC--CGTGTCAGGCCCATCTGTTCCAGCAGG 47959 || || ||||| | | ||| || | | || | || || | | || || Sbjct 981852 CCAGTCAAATGGGTTAGACGCGTTGTAGATCTTCGAGACA--CCAAGAGCGTGGAGAAGA 981909 Query 47960 TGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGG--G 48017 |||| |||||| |||||||||| | ||||||| | |||||| || || || | Sbjct 981910 CGATCAGCGACGAACTCGATGTACTGGCACATGAGCGCCGAGTTCATACCGATAAGCTCG 981969 Query 48018 ACACGG-GCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076 || || || | |||| || ||||||||||| ||| ||||| || | |||||| Sbjct 981970 ACTGGGAGCGAGTCCTT---GACGAACTCCTTCTCGATCGTGACGGCATCACTGACAATC 982026 Query 48077 TGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCA 48136 | | | || ||||||| | | |||| || | ||| ||||||| |||||| Sbjct 982027 TCGTGGATTCGCGACTCTGGGAGACGGTTGACAAGCTTGTTG---TAGAGCAAGCAGGCG 982083 Query 48137 AAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGC 48196 ||||| | ||| | |||||||| || ||||| ||| |||| ||||||| ||| |||||| Sbjct 982084 AAGTCACAGTGGAGACCTTCGTCACGACTGATAAGCTCGTTCGAGAAGCTGAGGCCAGGC 982143 Query 48197 ATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCC 48256 |||| || | || ||||||||||| | | ||| || || ||||||||||| ||| Sbjct 982144 ATGAGACCACGCTTCTTGAGCCAGAAGACCGAGCAGAACGAACCCGAGAAGAAGATACCC 982203 Query 48257 TCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCT-TGTCTGAGATCCA 48315 || | || ||||| ||| || | ||| | || | ||||||| || | | | ||| Sbjct 982204 TCAATGGCAGCGAAGGCGACGACACGCTCAGCAAACGCGGCGTTCTCTGAGTCACA-CCA 982262 Query 48316 GGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGG---AA 48372 | |||||||||| |||||||||| | |||||| || ||||| ||||| ||| || Sbjct 982263 GCGGAGCGCCCAGTTGGCCTTCTTCTGCACGCATGGGATTGTCTCAATGGCGCGGAACAA 982322 Query 48373 GAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACAT 48429 | | ||||| ||| | || ||| | || || | | | |||| | |||||| Sbjct 982323 GTGGTTCTT---CTCGGCGGCATCCTTGATGTACGTGTCAATCAACAGC---GAGTACAT 982376 Query 48430 CTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACAC 48489 || | ||| | ||||| || || |||||||| ||||||||| | ||| ||| ||| Sbjct 982377 TTCCGGGTGGATGTTCTCAATGGCAATCTGGAAGCCGTAGAAGCAGCGGGCTTCAGGCAC 982436 Query 48490 CTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGC 48549 ||| ||||| || ||| || || ||||| || || || ||||| ||||| Sbjct 982437 CTGGACTTCGTTGCTGAAGTTCATGGCAAGGTTCTCGTTCACAATACCATCACTGGCAGC 982496 Query 48550 AAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCC 48609 ||||| || || || || || | ||| || ||||| |||| ||| | |||| | Sbjct 982497 GAAGAACGCGAGCACGTGCTTGATGAAGTGACGCTCATTGTCGGTCATGTTGCCCCAGTC 982556 Query 48610 CTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTT 48669 || | ||| | | || || | || || || ||||||||| || || || || Sbjct 982557 CTTGAGGTCGTGCACAAGATCGATCTCCTCGACCGTCCAGAAGCTGGCTTCCGCCTTCTT 982616 Query 48670 GTACATGCCCCATATGTCC 48688 |||||| |||| || ||| Sbjct 982617 GTACATATCCCAGATCTCC 982635 >seq14 Length=753269 Score = 150 bits (166), Expect = 3e-31 Identities = 619/982 (63%), Gaps = 35/982 (4%) Strand=Plus/Minus Query 212690 ATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTAT 212749 ||| | ||| || |||||||||||| ||||| | | | ||| ||||||||||| | Sbjct 125164 ATGCACGTTGAGCGACTGACTCTGGCAGATGAAAGCACCACGGTCGGCGGCCATGTCAAG 125105 Query 212750 GATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTG-GGA 212808 | | | |||| || ||||||||| |||||| | | || || | | ||| ||| Sbjct 125104 AACAGCCTTCTGCTTGATCTCCCACACCGTCTTGTACTTGTCCTTCAC--CGGCTGAGGA 125047 Query 212809 AGC-CGGGGATGTTCTGCACAGACCCCCTGTGTATGGTCAGCTGCAGGCGCATGTCCTCG 212867 | | | | | |||||||| || || || | | ||| ||||| ||| Sbjct 125046 ATCACACGCACATTCTGCACCGAACCGTGGTCGTGGAGGATCTGGTTGCGCACTTCCGGC 124987 Query 212868 TTCCAGAGGCCC--CTGGTCTCCAGGCACTTGACCAGGTGAGGGTTGACTATCTGGAAGT 212925 |||||| |||| || | || | | ||| | ||||| ||| || ||| ||| | Sbjct 124986 GTCCAGATGCCCAACTCGA-TCAACTC-CTTCATCAGGTACTTGTTCACGATCGTGAACT 124929 Query 212926 CACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGT 212985 | || | ||||| | | | ||| | ||| | ||| | ||||| || |||||||| Sbjct 124928 CGCCCGCAAGCACACGACGGTTGTACATGTTGGTCGTGAATGGCTCAATCGACTCGTTGT 124869 Query 212986 TCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCA 213045 | || || ||||| || || || || ||||| || |||| || | ||| | || Sbjct 124868 TRCCGAGGATCTGYGCCGTCGAYGCYGTTGGCATAGGCGCCAACAACAACGAGTTGCGCA 124809 Query 213046 CTCCGTGCTCGCCGA--TGAGGCGCCGAAGCTCTGCCCAGTCCCATCTGCCAGACAGGTC 213103 | |||||||| | |||| | | | || | ||||||||| |||| ||| Sbjct 124808 CACCGTGCTCCATCACCTGAGCCTTCAACGCGTT--CCAGTCCCACATGCCCGACGA--- 124754 Query 213104 CTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTG 213163 | | | |||| ||||||||| ||||| |||||||| |||||||| || ||| Sbjct 124753 -TGG--CGTCACACCCCACATGTCRAACTGGAAGATGCCCTTGCTCACTGGYGAGCCAGC 124697 Query 213164 GTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTA 213223 | | ||| || || | ||| || | ||| ||||||| || ||| | | Sbjct 124696 RAACGTCTCGTATGGACCRTKSACCTYAGCYAACTCCATCGACGCCTCCATCGCACCAAA 124637 Query 213224 GTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTC------TGGGGACGTGAA 213277 ||| | || || || || | | |||| | || ||||| | | ||| | | Sbjct 124636 GTACAGCGTCTCGAAGATGTGCTTGTTCAACTCGCGAGCCTCGTCACTTTCGAACGCGTA 124577 Query 213278 GGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCT 213337 | ||||| ||| ||| ||| || || ||||| || |||| || || || | Sbjct 124576 GTTCATCAGGATG------AACGTATCGGCGAGACCCTGCACACCGAKACCRATAGGACG 124523 Query 213338 GTGTCTCAGGTTAGACTTGGAGCACTCCTCCAAGGGGTAAAAGTTGCAGTCGATGATCTT 213397 ||| | || ||| ||| | ||| | ||||| ||||| |||||||| ||| Sbjct 124522 GTGGCGCATGTTRCTCTTCTTGGCCTCTGGRATYGGGTAGTAGTTGATGTCGATGACCTT 124463 Query 213398 GTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTGATTGAACACGTA 213457 ||| ||||| || | |||| || | | | | || | | || | Sbjct 124462 GTTCAGGTTCTTCGTCACYWKYTTGGYTACCTKGTASARCTTCTSGAARTCRTAC---TT 124406 Query 213458 GCCCCCGTCCTGCACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTC 213517 ||| | || ||| |||| || || || || || |||||||| || || ||||| Sbjct 124405 GCCRTCCTCACYCACGAACTTYGGWAGRGCRATCGACGCRAGGTTGCAYACAGCSACCTC 124346 Query 213518 CTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAG 213577 | || ||||||||||| || | ||| ||||| |||||| | ||||| || || || Sbjct 124345 ATCCGAATCTGTGTACTCGATCACCTCACAGCACAAGTTGCTCGAGCGGATCGTACCGAG 124286 Query 213578 GTTCTGGTGGTTTGACTTTGCG-TTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGG 213636 |||||| ||||| ||| ||||| || || | |||||||| | ||| || || | || | Sbjct 124285 GTTCTGCTGGTTCGAC-TTGCGRTTSGCCGCRTCCTTGTACARCATRTAMGGCGTACCCG 124227 Query 213637 TCTCTAGCTGGGACACCAGTAT 213658 |||| | ||| ||| | || || Sbjct 124226 TCTCGATCTGYGACTCGAGRAT 124205 Score = 150 bits (166), Expect = 3e-31 Identities = 848/1345 (63%), Gaps = 59/1345 (4%) Strand=Plus/Plus Query 212909 GTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGG 212968 ||| || ||| ||| || || | ||||| | | | ||| | ||| | ||| | || Sbjct 130231 GTTCACGATCGTGAACTCGCCCGCAAGCACACGACGGTTGTACATGTTGGTCGTGAATGG 130290 Query 212969 CTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCAC 213028 ||| || ||||||||| || || ||||| || || || || ||||| || |||| Sbjct 130291 CTCAATCGACTCGTTGTTRCCGAGGATCTGYGCCGTCGAYGCYGTTGGCATAGGCGCCAA 130350 Query 213029 CAGGAGACTGTTCCTCACTCCGTGCTCGCCGA--TGAGGCGCCGAAGCTCTGCCCAGTCC 213086 || | ||| | ||| |||||||| | |||| | | | || | ||||||| Sbjct 130351 CAACAACGAGTTGCGCACACCGTGCTCCATCACCTGAGCCTTCAACGCGTT--CCAGTCC 130408 Query 213087 CATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTG 213146 || |||| ||| | | | |||| ||||||||| ||||| |||||||| ||| Sbjct 130409 CACATGCCCGACGA----TGG--CGTCACACCCCACATGTCRAACTGGAAGATGCCCTTG 130462 Query 213147 CTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGAC 213206 ||||| || ||| | | ||| || || | ||| || | ||| ||| Sbjct 130463 CTCACTGGYGAGCCAGCRAACGTCTCGTATGGACCRTKSACCTYAGCYAACTCCATCGAC 130522 Query 213207 GCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTC- 213265 |||| || ||| | |||| | || || || || | | |||| | || ||||| Sbjct 130523 GCCTCCATCGCACCAAAGTACAGCGTCTCGAAGATGTGCTTGTTCAACTCGCGAGCCTCG 130582 Query 213266 -----TGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACC 213320 | | ||| | || ||||| ||| ||| ||| || || ||||| || Sbjct 130583 TCACTTTCGAACGCGTAGTTCATCAGGATG------AACGTATCGGCGAGACCCTGCACA 130636 Query 213321 CCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTGGAGCACTCCTCCAAGGGGTAAAAG 213380 ||||| || || || | ||| | || ||| ||| | ||| | ||||| || Sbjct 130637 CCGATACCAATAGGACGGTGGCGCATGTTGCTCTTCTTGGCCTCTGGAATCGGGTAGTAG 130696 Query 213381 TTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTAC 213440 ||| |||||||| |||||| ||||| || | ||||| || | | || | | Sbjct 130697 TTGATGTCGATGACCTTGTTCAGGTTCTTCGTCACTTGTTTGGCTACCTTGTAGAGCTTC 130756 Query 213441 TCGTGATTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCAGGGCGATGCTGGCCAGG 213500 ||| || || | ||| | || ||| |||| || |||||||| || ||| Sbjct 130757 TCGAAATCATAC---TTGCCGTCCTCACTCACGAACTTCGGTAGGGCGATCGACGCAAGG 130813 Query 213501 TTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTG 213560 ||||| || || ||||| | || ||||||||||| || | ||| ||||| |||||| Sbjct 130814 TTGCACACAGCGACCTCATCCGAATCTGTGTACTCGATCACCTCACAGCACAAGTTGCTC 130873 Query 213561 CATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCG-TTGGCAGAATCCTTGTAGAG 213619 | ||||| || || |||||||| ||||| ||| ||||| || || | ||||||||| || Sbjct 130874 GAGCGGATCGTACCGAGGTTCTGCTGGTTCGAC-TTGCGATTCGCCGCATCCTTGTACAG 130932 Query 213620 CATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACCTGGC 213679 ||| || || | || ||||| | ||| ||| | || || | |||||| ||| Sbjct 130933 CATATACGGCGTACCCGTCTCGATCTGTGACTCGAGGATGGCGAACCAGAG----CTG-- 130986 Query 213680 CTTGACCAC----CCGCCTGACAGC---TCCGGGCGTAGCCTCGTACTGTTCGTAGAGCT 213732 ||| ||| | || ||| ||| | ||| || |||| |||| | | Sbjct 130987 -CTGAGCACGGATGGTCTTGCGAGCCTTTCC---CTCAGCTTCATACTTGGCGTACAACG 131042 Query 213733 CGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATGCG---GGACACATGA 213789 | ||| || | ||||||| | || || || || | | || || || | | Sbjct 131043 TCTCGAACTCCTCGCCCCAGCACTCGTAGAGACCTTGA---GCTTCGTTTGGGCAGAACA 131099 Query 213790 GGCTCCAGTCCCCG-TCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCG 213848 ||||| || ||| || ||| || | || |||||||| || |||| ||||| | || Sbjct 131100 AACTCCATTCACCGTTCGCCTC-CACACGCTTCATGAACAAATCTGGGATCCACAACCCG 131158 Query 213849 GTGAACAGGTCCCTGGTCCTCCTCTCGTCCACT-CCAGAGTTTTTGCGCAGATCTAGAAA 213907 || ||||| | | | | | || | || ||| || || || | || Sbjct 131159 TAAAAGAGGTCAC-GAGCACGATGGAGCTCATTACCGTGGTTCTTCTTCAAGTCCAAGAA 131217 Query 213908 GTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTTG-- 213965 || ||||||||||||||||| ||||||| ||||||||| || | ||| | |||| Sbjct 131218 CTCGAAGATGTCCGCGTGCCATGGCTCCAAGTAGATGGCGAACGAACCCTTGCGCTTGCC 131277 Query 213966 -CCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCC 214024 ||||||||||| || | ||| |||||| | |||| | || || || || Sbjct 131278 TCCGCCCTGGTCAACGTAGCGAGCCGTGTCGTTGAACACACGCAACATTGGAACGAGACC 131337 Query 214025 GTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCATGGA 214084 || ||| |||||| || || || || | | ||| | | |||| ||| Sbjct 131338 ATTCGACGATCCGTTCGTACCGCGAATGTAACTGTTAGTGGCACGGATGTTGTGCATACT 131397 Query 214085 GAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGAT 214144 || || ||||||||||| |||||||||| |||||| | | | || || ||| Sbjct 131398 GATACCGATGCCACCGGCCCACTTGGAGATAGATGCGCAGTTCTTGAGCGTGTCGTAGAT 131457 Query 214145 GCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTG-GGGCCTGG 214203 || | ||| |||||| | | | |||||||| || ||| | ||| |||| ||| Sbjct 131458 ACCCTCAATGGAGTCATCCTTCATGGCAAGCAAGAAACACGACGACAACTGAGGGCGTGG 131517 Query 214204 ACGAGCCAGAGTTGAAAAGCGTggg 214228 || || ||||||||||| || || Sbjct 131518 -CGTACCCGAGTTGAAAAGAGTTGG 131541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931528840985600